Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P24
         (1031 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-4|AAK68244.1|   90|Caenorhabditis elegans Neurabin protei...    29   4.1  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   5.4  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical pr...    29   7.1  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    29   7.1  

>U80437-4|AAK68244.1|   90|Caenorhabditis elegans Neurabin protein
           1, isoform c protein.
          Length = 90

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 134 SPPWQRQPRPTMPPK*PCTSLWSPNDAEDLCPVGQ 30
           SP  QRQP P +PPK P  S   P+    +C + Q
Sbjct: 37  SPRLQRQPPPPLPPKPP--SQCPPSPMSQVCVIKQ 69


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +3

Query: 612 PYTVEKKVPYEVKVHVDKPYEVKVPVDRPYNVYVP 716
           P  V + VP  V V V  P  V VPV  P  VY P
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPVPVPTPVYQP 183


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
 Frame = +3

Query: 480  NTSPIPSRRKYPMR*KCPYLSPTPPKRKFPLPSRNTSNTQYTYQPYTVEKKV--PYEVKV 653
            NT+P P+  + P   K      T P R  P P+       Y  QP  V++    P     
Sbjct: 1979 NTAPQPTTYQRPHPIKVQVRPATKPYRPRPSPAPRIQPRPYNPQPVVVQRPQFRPQPQPR 2038

Query: 654  HVDKPYEVKVPVDRPYNVYVPKP 722
               +P     P  +P   Y+ +P
Sbjct: 2039 PQPQPQPQPQPQPQPQQPYIQRP 2061


>Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical
           protein F15D4.5 protein.
          Length = 491

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 570 LPSRNTSNTQYTYQPYTVEKKVPYEVKVHVDKPYEVKVPVDRPYNVYVPKPYP 728
           +  R T+NT    +     +     ++   D+P E+  P+ +P  ++ PKP P
Sbjct: 78  IEQRGTTNTNAASETARHYEMATISIEKETDQPAEISEPLQKPAELF-PKPPP 129


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
 Frame = +3

Query: 483 TSPIPSRRKYPMR*KCPYLSPTP-PKRK-FPLPSRNTSNTQYTYQPYTVEKKVPYEVKVH 656
           + P P+   +P     P   P P PK   FP P        +  +P    K +P+   + 
Sbjct: 100 SEPFPNPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFP-KPMLFPKPMPFPKPMP 158

Query: 657 VDKPYEVKVPVDRPYNVYVPKPYP 728
             KP     P   P+   +PKP P
Sbjct: 159 KSKPKSEPFPNPMPFPKPMPKPKP 182



 Score = 28.7 bits (61), Expect = 7.1
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
 Frame = +3

Query: 483 TSPIPSRRKYPMR*KCPYLSPTP-PKRK---FPLPSRNTSNTQYTYQPYTVEKKVPYEVK 650
           + P P+   +P     P   P P PK K   FP P           +P    K +P  + 
Sbjct: 164 SEPFPNPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPIP-KPMPFPKPMPKPMP 222

Query: 651 VHVDKPYEVKVPVDRPYNVYVPKPYP 728
            H  KP+   +   +P  +  P P+P
Sbjct: 223 KHKPKPFPKPMLFPKPMPIPKPMPFP 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,802,667
Number of Sequences: 27780
Number of extensions: 290807
Number of successful extensions: 1139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2730644118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)