Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P21
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    30   0.36 
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    29   0.62 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   3.3  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   4.4  
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    26   5.8  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    26   5.8  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    26   5.8  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   7.7  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 66  RIPIRVYSLNLVLN*HLDKIRPFHFIFELHNSERRARSRHHCVSVEHAGRRARHQ 230
           R+P R+Y   L  N    K +P   I ++ N+   +  R H +S++H  R   HQ
Sbjct: 790 RMPQRIYGKILATNDMEIKYKPKILISQIWNAIVISMYREHLLSIDHVQRLLYHQ 844


>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 262 DVGDASDDEKDMSAADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNE 432
           +VG   DD   + A D   VW    E +++    I+   G ++++  +EGK   R E
Sbjct: 78  NVGSIEDDSPYILAQDLVNVWKAACEDNYEPIREIHERLG-KQLLEKEEGKEKTREE 133


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 66  RIPIRVYSLNLVLN*HLDKIRPFHFIFELHNSERRARSRHHCVSVEHAGRRARHQ 230
           R+P R+YS  L         +P   + ++ NS   +  R H +++EH  R   HQ
Sbjct: 760 RMPKRIYSKILCTPEVDSSYKPKVLVSQIWNSIIISLYREHLLAIEHVQRLIYHQ 814


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 458 LSLIYLAINSFLPYILPSSERIILRRPQGGYIASASWKLCSMSG 327
           L+LIYL    F PY+  +S  I  +          +W+LC + G
Sbjct: 708 LNLIYLLAAIFYPYMPSTSTSIYKQLNAPAAAIPDTWELCLLPG 751


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 263 SRCLASAPPDPLVSGAPAGVLHGDAMVPAASAPLAIMEFEDEVKG 129
           ++   + P   +V+ APA    G+A  PAA A     E  DE  G
Sbjct: 263 TKAFLADPSAFVVAAAPAAAAGGEAEAPAAEAAAEEEEESDEDMG 307


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +1

Query: 268 GDASDDEKDMSAADA--EGVWSPDIEQSFQEALAIYPPCGRRKII---LSDEGKMYGRNE 432
           G+ SD+E +    DA  E ++S D E+   E      P G  K++   L +    YG  E
Sbjct: 117 GEGSDNEDEDEDIDALIEDLYSQDQEEEQVEEEESPGPAGAAKVVPEELLETDPKYGLTE 176

Query: 433 LIARYIKLRTGKTRTRKQVSSHIQ 504
                 K + G  + +++ +++I+
Sbjct: 177 SEVEERKKKYGLNQMKEEKTNNIK 200


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 244 ADAKHLDVGDASDDEKDMSAADAEGVWSP 330
           ADAK+ D   AS +++ M +    GV+SP
Sbjct: 424 ADAKNNDSSSASIEKRGMRSLAVNGVYSP 452


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 482 NKSRHTYRC*LGENYEKFKPNLKCNFG 562
           N  +  +R  L E+Y+KF PN K + G
Sbjct: 95  NDLKDRFRTILPEDYKKFYPNAKTHMG 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,517
Number of Sequences: 5004
Number of extensions: 49837
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)