Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_P19
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 241 9e-65
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 233 3e-62
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 124 1e-29
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 110 3e-25
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 26 6.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 8.4
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 8.4
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 241 bits (590), Expect = 9e-65
Identities = 106/158 (67%), Positives = 126/158 (79%)
Frame = +1
Query: 133 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 312
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 313 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 492
+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 493 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLS 606
+IR++AD C+GLQGFL+FH LL+ERL+
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLA 158
Score = 35.1 bits (77), Expect = 0.014
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 608 VDYGKKSKPGVRHLPRASGSTAVVEPYNSILT 703
++Y KKSK P ST+VVEPYNS+LT
Sbjct: 159 MEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLT 190
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 233 bits (569), Expect = 3e-62
Identities = 107/163 (65%), Positives = 128/163 (78%), Gaps = 5/163 (3%)
Frame = +1
Query: 133 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 297
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 298 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 477
TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 478 DLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLS 606
D VL+RIR++AD C+GLQGFL+FH LL+ERL+
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLN 162
Score = 36.3 bits (80), Expect = 0.006
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 608 VDYGKKSKPGVRHLPRASGSTAVVEPYNSILT 703
++YGKKS P ST+VVEPYNS+LT
Sbjct: 163 MEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLT 194
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 603 LRLTTARSLNLEFAIYPAPQV 665
L + + NL+F++YPAPQV
Sbjct: 161 LNMEYGKKSNLQFSVYPAPQV 181
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 124 bits (300), Expect = 1e-29
Identities = 61/157 (38%), Positives = 86/157 (54%)
Frame = +1
Query: 133 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 312
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 313 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 492
+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 493 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 603
+R+ A+ C LQGF + H LL+ ++
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKI 155
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 110 bits (264), Expect = 3e-25
Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Frame = +1
Query: 136 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 315
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 316 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 489
+PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 490 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLS 606
D I + AD L+GF + H L+ERL+
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLN 158
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 6.3
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = +2
Query: 494 ESASSLTSVPVCKDS*SSTPSVEVPALGSLPY*WSVSPVDYGKKSKPGVRHLPRASGSTA 673
E S+ P K S P +EV S+P S+SP K S P+ S ++
Sbjct: 506 EQLSTPLEAPAHKHSAVLQP-LEVNRSISIPPPKSISPSILHKPSLESASSTPKISSCSS 564
Query: 674 VVEPYNSILTNPHXP 718
+P+NS L H P
Sbjct: 565 TPKPFNSKL-RAHLP 578
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 212 STASSLMARCPQTRPSGVETILSTLSSARPELAST 316
ST SSL + ++PS T ST SSA P S+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 231 WPDAHRQDHRGWRRFFQHFLQR 296
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,569
Number of Sequences: 5004
Number of extensions: 67053
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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