Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P18
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    31   0.23 
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    30   0.52 
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    28   1.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.6  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    28   2.1  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    28   2.1  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   2.8  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   4.8  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   6.4  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   6.4  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   6.4  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   8.5  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 1/153 (0%)
 Frame = +3

Query: 246 SAKETTR-PAAGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNPNNIVPATY 422
           S+ ETT  P++  SL   G  +       +L+   +          D  T+ + I  +  
Sbjct: 313 SSSETTNLPSSSSSLVTIGESSFPSSLLSLLTQSFSTVRSTSSSSTDQLTSASPISSSVI 372

Query: 423 SPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKANSSNDVLSLKITQVPNDDDEVYTKAM 602
           SP+V S   +  TN+G++    GD +++       +++      +T V    + + T   
Sbjct: 373 SPSVSSPTSSILTNSGSI--KSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTY 430

Query: 603 LGFELLHEKASTFDNHIRYISQYIMKKAGVKES 701
                L     +  N I Y +   +  + +K S
Sbjct: 431 DSHTFLTTITPSPSNSISYTNNTFIPSSSIKSS 463


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 126 ETFIEQWMAFSLNYVNGASPNLENLDLFVRKEFSKRRTNASAKETTRPAAGKSLTVYGAK 305
           E  ++   + S +  +   PNL +   F    F +   N  AKE++   A  S+T Y  K
Sbjct: 197 EVCVDSITSLSFDKTDMTKPNLSSYKTFFETNFIENTKNFYAKESSEYLASHSITDYLKK 256

Query: 306 A 308
           A
Sbjct: 257 A 257


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +3

Query: 261 TRPAAGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNPNNIVPATYSPTVG- 437
           T P    S ++ GAK + PP   + + + +      +++K+     +N  P T +P++  
Sbjct: 239 TIPKGTPSTSIEGAKTSIPPSHAMQNPHNSFPASADRLQKNHPVQSSNFNPYTPAPSITV 298

Query: 438 SAKYASRT-NAGTVVHSYGD 494
              Y   T   G    S+GD
Sbjct: 299 PPNYIPNTAMMGPSYSSFGD 318


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +3

Query: 237 TNASAKETTRPAAGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNPNNIVPA 416
           T++S   T   A   S+    A   S   S + SS          +  ++ ++  + V  
Sbjct: 487 TSSSIFSTATEATDTSVQTSSAIYDSSSTSNIQSSSSVYASSTGALSSNSLSSSTSSVST 546

Query: 417 TYSPTVGSAKYASRTNA 467
           +Y P   S+ YAS T A
Sbjct: 547 SYIPNASSSVYASSTEA 563


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +3

Query: 459 TNAGTVVHSYGDEKLLQELGKANSSNDVLSLKITQVPND-DDEVYTKAMLGFELLHEKAS 635
           +N+G+ V     +K++  L   NSS D L  +  ++ +   DE++TK +    +      
Sbjct: 165 SNSGSAVVLKNSKKVVPRLNTVNSSLDFLQNRTPRLSSILPDEIFTKRLPNLRIFSNFIK 224

Query: 636 TFDNHIRYISQYIMKKAGVKESTSVRP 716
                I  +  +  K+     S  VRP
Sbjct: 225 VCRPLIYMLFMWHWKRKQKSSSLKVRP 251


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 420 YSPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKAN 527
           Y+P+V   K A++     ++  YGDE  + E+G  N
Sbjct: 214 YAPSVLPQKEAAKKGYAQILWLYGDEDYITEVGTMN 249


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 300 AKATSPPDSEVLSSYVAVTPKRVKIEKDATTNPNNIVP 413
           A  TSP  + + S++ A  PKR    + A T+P+ I+P
Sbjct: 192 ASNTSPTPNSIKSAHPAEPPKRPAFTRSA-TSPDKILP 228


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 154 NAIHCSIKVSASILFSSHKFTHFNKTSCSTFMPKNLNCSVTNS 26
           N    ++K+S  +L  S  F  F    CS F  KN + S+T+S
Sbjct: 331 NEFQGTLKISDDVLKKSEHFMDF----CSNFKGKNNSSSITSS 369


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = -3

Query: 262 VVSLADALVRRLENSFLTNKSKFSKFGEAPFT*FKLNAIHCSIKVSASILFSSHKFTHFN 83
           V  LAD   R      L N S  +   +     F++ A+H +  VS S+   +    H  
Sbjct: 210 VARLADEFTRDSGLPDLENLSHVNVLLDIALDKFRIEALHANFSVSISL--RNKAIQHLL 267

Query: 82  KTSCSTFMPKNLNC 41
           K+  +    K +NC
Sbjct: 268 KSKIAANTDKAINC 281


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 75  DVLLKCVNLCEENN-IDAETFIEQWMAFSLNYVNGASPNLENLDLFVRK 218
           D+    ++ C+E   +DA   I+ W++  L++      N+   + F+RK
Sbjct: 148 DLTSSILDACDEEILVDARNQIKNWLSSELSHSTSKYLNITTSNRFIRK 196


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 531 SCSLYLILVVISHLHKNGPPCLRLFSTRTSLN 436
           SC L+ +    S   KN P CL LFS+   +N
Sbjct: 118 SCGLFFVSYFFSL--KNNPFCLMLFSSHEKMN 147


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 583  SSSSLGTCVIFKLSTSFELFALPNSCSNFSSP*EWTT 473
            S  SL    I  LS ++ L++  +   N S+P  WT+
Sbjct: 1176 SKKSLSELKILGLSQTYLLYSYNSKVDNISNPGSWTS 1212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,555,811
Number of Sequences: 5004
Number of extensions: 76166
Number of successful extensions: 248
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)