Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_P18
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0846 - 7920960-7921112,7921247-7921373,7921455-7921585,792... 40 0.004
04_04_0765 - 27910189-27912393,27912521-27912598 33 0.41
09_03_0056 - 11936264-11939677 32 0.72
10_08_0480 - 18203186-18203284,18203821-18204006,18204590-182047... 31 1.7
04_03_0021 - 9548600-9548794,9548851-9549006 30 2.2
01_01_0297 - 2437487-2437777,2438088-2438123 30 2.2
01_06_1477 + 37645143-37647425 29 5.1
02_01_0013 - 85332-85637 28 8.9
>12_01_0846 -
7920960-7921112,7921247-7921373,7921455-7921585,
7921992-7922033,7922126-7922167,7922416-7922508,
7922590-7922685,7923281-7923448,7923519-7923594,
7923687-7923766,7923855-7923950,7924023-7924392,
7925356-7925431,7925559-7925649
Length = 546
Score = 39.5 bits (88), Expect = 0.004
Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 1/202 (0%)
Frame = +3
Query: 303 KATSPPDSEVLSSYVAVTPKRVKIEKDATTNPNNIVPATYSPTVGSAKYASRT-NAGTVV 479
K P S +T R + A TN + I P + + +Y + N +V
Sbjct: 75 KQEKPNGESCNSELTPLTTDRPSSSRLAKTNGDRITPFSQRVNKFTQQYVLNSDNVASVP 134
Query: 480 HSYGDEKLLQELGKANSSNDVLSLKITQVPNDDDEVYTKAMLGFELLHEKASTFDNHIRY 659
E E+ + + +L QV E + M ++ + ++ + ++ IR
Sbjct: 135 SKDEIESTEDEVIRRVQPSKRCTL---QVQRSQPEPGCRFM--YDRIEDRFNYLEDRIRR 189
Query: 660 ISQYIMKKAGVKESTSVRPKTQTXVYVAGRIXCDAXARLNAKCVVLQGTWEESXXQSVPG 839
E ++ ++ G + CD LN K ++LQG+ E S Q V
Sbjct: 190 SGSLFSASGLCGEPADATLASEESMFSVGMVICDGEGHLNEKSILLQGSVEHSRGQHVRL 249
Query: 840 XFDNVFXYPLXPXQXVVLXXXN 905
+V + L P Q V + N
Sbjct: 250 DLKDVDRFSLFPGQVVGIQGHN 271
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 32.7 bits (71), Expect = 0.41
Identities = 22/73 (30%), Positives = 29/73 (39%)
Frame = +3
Query: 237 TNASAKETTRPAAGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNPNNIVPA 416
T S PAA + A A PDS V + V +P V +P +IV A
Sbjct: 389 TTCSPAAAGMPAAAVAAAGSTAPAVVAPDSPVAAVAVFSSPTAVAASSSPAASPVDIVAA 448
Query: 417 TYSPTVGSAKYAS 455
+ SP A + S
Sbjct: 449 SSSPAAAVAAFGS 461
>09_03_0056 - 11936264-11939677
Length = 1137
Score = 31.9 bits (69), Expect = 0.72
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Frame = +3
Query: 81 LLKCVNLC----EENNIDAETFIEQWMAFSLNYVNGASPNL----ENLDLFVRKEF 224
L +C + C + + DAET ++ W+A L NG+ P + E D VR+ F
Sbjct: 568 LKRCFSFCSMYPKSHEFDAETLVDSWVAVGLVVSNGSVPAVDIGHEYFDQLVRRSF 623
>10_08_0480 -
18203186-18203284,18203821-18204006,18204590-18204736,
18204829-18204912,18206290-18206532
Length = 252
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 423 SPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKANSSNDVLSLKITQVPNDDDEVYTKAM 602
SP ++Y AG G ++E+GK S ++ + ++P+D +A+
Sbjct: 63 SPAAAVSRYNRMARAGADEVQTGACVQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEAL 122
Query: 603 LGFELLHEKASTF-DNH 650
+ LLH K ST +NH
Sbjct: 123 I---LLHSKVSTLAENH 136
>04_03_0021 - 9548600-9548794,9548851-9549006
Length = 116
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 357 PKRVKIEK--DATTNPNNIVPATYSPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKANS 530
P + +I K + N +NIVP T K T GT+V Y KL+ ++ +S
Sbjct: 17 PPKSRIPKLGGSEVNESNIVPITLDKLTPEQKKDLETRQGTIVQRY-KMKLVADVAGTSS 75
Query: 531 SND 539
S D
Sbjct: 76 SKD 78
>01_01_0297 - 2437487-2437777,2438088-2438123
Length = 108
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = +3
Query: 249 AKETTRPAAGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNPNNIVPATYSP 428
A+E R A L + G + ++V + ++ K + T NP +Y+
Sbjct: 10 AEELPRNATAGFLGIMGIVSEDVDTNKVSITQLSRNSKHINDTVFQTPNPKCPTTTSYAD 69
Query: 429 TVGSAKYASRTNAGTVVHSYGDEKLLQE 512
+ A+ RTN T+++S G K LQE
Sbjct: 70 QI-LAEDGRRTNVITMLNSQGTTKALQE 96
>01_06_1477 + 37645143-37647425
Length = 760
Score = 29.1 bits (62), Expect = 5.1
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +3
Query: 135 IEQWMAFSLNYVNGASPNLENLDLFVRKEFSKRRTNASAKETTRPAAGKSLTVYGAKATS 314
+ QW +++N +SP+L N F+ F +R A+A ET + +T GA A S
Sbjct: 629 VTQWSTYAVNCSGASSPDL-NYPSFI-AYFDRRSAAAAAAET--KTFVRVVTNVGAGAAS 684
Query: 315 ---PPDSEVLSSYVAVTPKRVKIEKDATTNPNNIV 410
+ V+VTP R+ K T +V
Sbjct: 685 YRAKVKGNLGGLAVSVTPSRLVFGKKGETQKYTLV 719
>02_01_0013 - 85332-85637
Length = 101
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 183 PNLENLDLFVRKEFSKRRTNASAKETTRPAAGKSLTVYGAKATSPPDS 326
PN+ + L E+ + +ASA ++T A K+ T +++T PP S
Sbjct: 50 PNVNSKILSKVIEYCNKHVHASADDSTSSADLKNWTPTSSRSTRPPSS 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,540,146
Number of Sequences: 37544
Number of extensions: 458689
Number of successful extensions: 1248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -