Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P18
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical p...    31   0.86 
U46669-3|AAA85744.2|  737|Caenorhabditis elegans Regulator of g ...    30   2.0  
Z46676-5|CAA86667.3|  418|Caenorhabditis elegans Hypothetical pr...    30   2.6  
U24189-2|AAC47513.1|  418|Caenorhabditis elegans actin-related p...    30   2.6  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z81091-6|CAE17821.2|  306|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z75952-8|CAH10792.1|  306|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U64835-7|AAG24198.2|  427|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U13070-4|AAC46640.2|  531|Caenorhabditis elegans Aldehyde dehydr...    29   6.0  
Z75952-3|CAB00096.1|  286|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z47745-3|CAA87666.1|  313|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.        28   8.0  
AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    28   8.0  
AF024503-13|AAG24083.1|  347|Caenorhabditis elegans Hypothetical...    28   8.0  

>Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical
           protein Y57G11C.20 protein.
          Length = 649

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 495 EKLLQELGKANSSNDVLSLKITQVPNDDDEVYTKAMLGFELLHE--KASTFDNHIRYI 662
           E + +E  +A+S    ++LKI Q PND + +Y +  L FE +    K S F+N   Y+
Sbjct: 455 EAIEKEAVRASSEYHDVALKIFQKPNDRN-IYDELKLSFERIRSRIKVSHFENSSDYL 511


>U46669-3|AAA85744.2|  737|Caenorhabditis elegans Regulator of g
           protein signalingprotein 6 protein.
          Length = 737

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 384 ATTNPNNIVPATYSPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKANSSNDVLS 548
           A T+ + +    YSP  G   +ASR  AGT   ++G        G A++S++ +S
Sbjct: 503 AGTSQDRMASGVYSPATGGPSFASRAAAGT---NFGGSANQVNAGSASTSSNNVS 554


>Z46676-5|CAA86667.3|  418|Caenorhabditis elegans Hypothetical
           protein C08B11.6 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 130 VSASILFSSHKFTHFNKTSCSTFMPKNLNCSVTNSSEAIFCTS 2
           VS+ ILF    FT  +KTS ST + K+ N  + N   A+   S
Sbjct: 109 VSSEILFDYFGFTEVHKTSASTLVAKHSN-KINNEKCAVVVDS 150


>U24189-2|AAC47513.1|  418|Caenorhabditis elegans actin-related
           protein-like protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 130 VSASILFSSHKFTHFNKTSCSTFMPKNLNCSVTNSSEAIFCTS 2
           VS+ ILF    FT  +KTS ST + K+ N  + N   A+   S
Sbjct: 109 VSSEILFDYFGFTEVHKTSASTLVAKHSN-KINNEKCAVVVDS 150


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
 Frame = +3

Query: 267 PAAGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDAT--TNPNNIVPATYSPTVGS 440
           PA        GA A +P    +    VA   +R    K A+  + P    PA+ S    +
Sbjct: 373 PARSAPAPPRGAPAKAPKAEPIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPAT 432

Query: 441 AKYASRTNAGTVVHSYGDEKLLQELGKANSSNDVLSLKITQVP 569
           A  ASR +   V     D    ++  + ++  D++ +  T  P
Sbjct: 433 APEASRRDPNDVTIVLDDSLFPEDFNQGSAPMDIVVIPPTPEP 475


>Z81091-6|CAE17821.2|  306|Caenorhabditis elegans Hypothetical
           protein F55H12.6a protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 498 KLLQELGKANSSNDVLSLKITQVPNDDDEVYTKAMLGFELLHEKASTFDNHIRYISQYIM 677
           K  + LGK +  +   ++  +  PN++ E   K     + L       DNHIR  +Q   
Sbjct: 129 KFNRVLGKRHRISPTPTINSSVTPNEEHEPDLKMFNSGDTLQNFLIDIDNHIRQKNQESQ 188

Query: 678 KKAGV-KESTS 707
           +  G  +ESTS
Sbjct: 189 EAIGTGEESTS 199


>Z75952-8|CAH10792.1|  306|Caenorhabditis elegans Hypothetical
           protein F55H12.6a protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 498 KLLQELGKANSSNDVLSLKITQVPNDDDEVYTKAMLGFELLHEKASTFDNHIRYISQYIM 677
           K  + LGK +  +   ++  +  PN++ E   K     + L       DNHIR  +Q   
Sbjct: 129 KFNRVLGKRHRISPTPTINSSVTPNEEHEPDLKMFNSGDTLQNFLIDIDNHIRQKNQESQ 188

Query: 678 KKAGV-KESTS 707
           +  G  +ESTS
Sbjct: 189 EAIGTGEESTS 199


>U64835-7|AAG24198.2|  427|Caenorhabditis elegans Hypothetical
           protein T09D3.4 protein.
          Length = 427

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 273 AGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTN---PNNIVPATYSPTVGS 440
           A  S+ ++G K+ +   +  LSSY AV  K VKI  +   N    NN V A +   V S
Sbjct: 257 AQMSVKIFGEKSITEKKT-TLSSYCAVDWKNVKINPETAINTEQANNYVKAEFHAHVDS 314


>U13070-4|AAC46640.2|  531|Caenorhabditis elegans Aldehyde
           dehydrogenase protein 9 protein.
          Length = 531

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 399 NNIVPATYSPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKA 524
           N +VPAT    VG+A     T    +VH    +++L+ L KA
Sbjct: 302 NMVVPATVFAAVGTAGQRCTTTRRLIVHDKVYDQVLERLKKA 343


>Z75952-3|CAB00096.1|  286|Caenorhabditis elegans Hypothetical
           protein F55H12.6b protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 513 LGKANSSNDVLSLKITQVPNDDDEVYTKAMLGFELLHEKASTFDNHIRYISQYIMKKAGV 692
           LGK +  +   ++  +  PN++ E   K     + L       DNHIR  +Q   +  G 
Sbjct: 114 LGKRHRISPTPTINSSVTPNEEHEPDLKMFNSGDTLQNFLIDIDNHIRQKNQESQEAIGT 173

Query: 693 -KESTS 707
            +ESTS
Sbjct: 174 GEESTS 179


>Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical
           protein K02A4.1 protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 420 YSPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKAN 527
           Y+PT+   K A+  N   V+  YG+ + L E+G  N
Sbjct: 249 YAPTIWVGKEAASKNCQQVLWLYGENEDLTEVGTMN 284


>Z47745-3|CAA87666.1|  313|Caenorhabditis elegans Hypothetical
           protein T19H5.4 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +3

Query: 210 VRKEFSKRRTNASAKET-TRPAAGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDA 386
           +R+   K+  +A A  T + PA+ + L+    KA + P ++V S +  ++ ++     DA
Sbjct: 217 IRQSKRKQDQDAIAARTASEPASARRLSAKKEKAVTEPLNQVSSMFKIISIEKNWESFDA 276

Query: 387 TTNPNN 404
           T N +N
Sbjct: 277 TDNEDN 282


>U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 420 YSPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKAN 527
           Y+PT+   K A+  N   V+  YG+ + L E+G  N
Sbjct: 230 YAPTIWVGKEAASKNCQQVLWLYGENEDLTEVGTMN 265


>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
           protein F14D2.6 protein.
          Length = 998

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +3

Query: 462 NAGTVVHSYGDEKLLQELGKANSSNDVLSLKITQVPNDDDEVYTKAMLGFELLHEKASTF 641
           N+G  + +  D   L+ L +  + N +L +  T +PN       K++LG   L    + F
Sbjct: 666 NSGLKITNVSDFTSLKPLSQLKTLNGMLEIYETDLPNISFLGNLKSLLGTPRLEFSYTQF 725

Query: 642 DNHIRYISQYIMKKAGVKESTSVRP-KTQTXVYVA 743
            N         +KK G++   +  P  T+  VY+A
Sbjct: 726 -NTTSIHDNPKLKKLGLESLKNFTPLDTKLGVYIA 759


>AF024503-13|AAG24083.1|  347|Caenorhabditis elegans Hypothetical
           protein F31F4.15 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
 Frame = +3

Query: 444 KYASRTNAGTVVHSYGDEKLLQELGKANSSNDV-LSLKITQ---VPNDDDEVY------T 593
           KY    N GT V   G +++  E     +  D+ ++LK  +   + ND  E Y      T
Sbjct: 112 KYTEAENGGTTVKCNGQKRIEAENFVDRAFKDMKIALKNVETFEINNDTKEKYNIVKHFT 171

Query: 594 KAMLGFELLHEKASTFD 644
           KA    E +H KA  FD
Sbjct: 172 KAFKSEESIHTKAMIFD 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,723,996
Number of Sequences: 27780
Number of extensions: 424124
Number of successful extensions: 1226
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)