Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P18
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   5.1  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   5.1  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   5.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   8.8  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 576 DDEVYTKAMLGFELLHEKAS 635
           DDE Y +A +GF+ +  K S
Sbjct: 103 DDEYYKRAPMGFQGMRGKKS 122


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 576 DDEVYTKAMLGFELLHEKAS 635
           DDE Y +A +GF+ +  K S
Sbjct: 103 DDEYYKRAPMGFQGMRGKKS 122


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 576 DDEVYTKAMLGFELLHEKAS 635
           DDE Y +A +GF+ +  K S
Sbjct: 103 DDEYYKRAPMGFQGMRGKKS 122


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 714 PKTQTXVYVAGRIXCDAXARLNAKCVVLQGTW 809
           P T   V+ +G + C    +  AKC     +W
Sbjct: 145 PPTTCLVFSSGSVSCVPSVKHVAKCATDFSSW 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,884
Number of Sequences: 438
Number of extensions: 4811
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)