Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_P17
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 33 0.055
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 32 0.095
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 30 0.38
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 2.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 3.6
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 27 4.7
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 4.7
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 27 4.7
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 8.3
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 33.1 bits (72), Expect = 0.055
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Frame = +3
Query: 252 PVVHAAPVEHSSYIHASP---VVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEF 422
P H H ++ P P +H HH P V H+ DH P K+E
Sbjct: 363 PWKHEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEE 422
Query: 423 SYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQPDG 527
S + H+ + + D ++ Q DG
Sbjct: 423 HCSCHEDHSVHERPSAKGALEDYIQTFVETFQIDG 457
Score = 31.1 bits (67), Expect = 0.22
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Frame = +3
Query: 324 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE-------FSYSVEDPHTG---DHKS-QH 470
P +H HH P V H+ DH P K+E +S PH G DHK +H
Sbjct: 307 PWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPDHKPWKH 366
Query: 471 E--TRDGDVVKG-EYSLLQPDGSIRKVEYTADHHNGFNAIVHN-SEPD 602
E G ++ +++ +PD K E H + HN ++PD
Sbjct: 367 EEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPD 414
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 324 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 419
P +H HH P V H+ DH P K+E
Sbjct: 195 PWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHE 226
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 324 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 419
P +H HH P + H+ DH P K+E
Sbjct: 280 PWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHE 311
Score = 25.8 bits (54), Expect = 8.3
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Frame = +3
Query: 348 HHAAIPIAVEHSDHVEDHAPAKYE-----FSYSVEDPHTG---DHKS-QHE--TRDGDVV 494
HH P V H+ DH P K+E + PH G DHK +HE G
Sbjct: 261 HHDKFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHEEHCHHGRFP 320
Query: 495 KG-EYSLLQPDGSIRK-VEYTADHHNGFN-AIVHN-SEPD 602
+ ++ +PD K E+ + HH+ F+ + HN ++PD
Sbjct: 321 RPVPHNGTKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPD 360
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 32.3 bits (70), Expect = 0.095
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 696 SAPVLHSAPVVHSTPXVHSAPLIHSAPGXHSEPXVXPXP 812
+APV+ AP VH P AP + SAP + P V P
Sbjct: 519 AAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAP 557
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 696 SAPVLHSAPVVHSTPXVHSAPLIHSAPGXHSEP 794
S P +APVV P VH P AP S P
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAP 545
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 690 IHSAPVLHSAPVVHSTPXVHSAPLIHSAPGXHSEPXVXPXP 812
+ AP +H P P V SAP +AP P V P
Sbjct: 523 VPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRP 563
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 598 GSELCTIALNPLWWSAVYSTLRIEPSGWSREYSPFTTSPSRVS 470
G +C + L LW ++Y+TLR G + E PFT S S VS
Sbjct: 12 GIPICGVILLILWGYSLYNTLRFMVPGKATE--PFTLSLSDVS 52
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 367 LPSNTPIMSKTML--PRSMSSHIPSRIPTPAITSPN 468
+PSNT I S L P S++IP+ +PT + S N
Sbjct: 455 VPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSN 490
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 347 HDWSMLHRAEVLDYWRSMYI 288
+D+S + E +DYW+S+YI
Sbjct: 549 NDYSPMLSYEAIDYWKSLYI 568
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 367 LPSNTPIMSKTMLPRSMSSHIPSRIPTPAITSPNTKPV 480
+P T + + LP S+ + S+ TP+ ++ T PV
Sbjct: 185 IPEGTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 282 SSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 443
S Y+H VV+ Q P+ H P + SDH + A K F SV++P
Sbjct: 414 SRYLHFWLVVEGLKESQDDPLNAHMIAPFSDIVSDHTDFTAIVKSYFE-SVDNP 466
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 4.7
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +1
Query: 253 PLFTPPPWNILRIYMLRQ*SNTSALCNMLQSCTTLR-FQLPSNTPIMSKTMLPRSMSSHI 429
P PP +L +N S LC+++ S +++ F + M+ LP +
Sbjct: 11 PCLNNPPTYPWSSPILSSIANPS-LCDIVSSPSSVSSFASSDDFAFMNAYCLPIQQNHQF 69
Query: 430 PSRIPTPAITSPNTKPVMVMS*KANTLYSSLMV 528
S P SPN +P++ + N Y+SL++
Sbjct: 70 GS----PVAASPNQQPLVESQNRRNVTYASLVI 98
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 198 SHAAPVLTHAAPLIQHAGPVVHAAPV 275
SHAAP+ + P H+ P + A PV
Sbjct: 74 SHAAPLHPLSPPSFTHSQPQIQAQPV 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,239
Number of Sequences: 5004
Number of extensions: 69120
Number of successful extensions: 259
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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