Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_P17
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0397 - 3509186-3510291,3510322-3512335 28 0.52
02_01_0302 - 2021221-2023305 31 0.93
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 31 1.2
05_03_0102 + 8414109-8414505,8416172-8416227 30 2.8
03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169 30 2.8
07_01_0408 - 3137705-3138017,3139361-3139371,3140693-3140770,314... 29 3.8
10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128... 29 5.0
04_04_0512 + 25806599-25808080 29 5.0
02_03_0167 - 15923872-15925683 29 5.0
10_01_0270 - 2876907-2877547,2877838-2878012 29 6.6
04_04_0776 - 28000220-28000337,28000760-28000872,28001194-280012... 29 6.6
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 28 8.7
04_01_0471 + 6099768-6100094,6100384-6100416 28 8.7
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 28 8.7
01_06_1222 - 35499069-35499287,35500319-35501734 28 8.7
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.9 bits (59), Expect(2) = 0.52
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -1
Query: 495 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHGLRHDRSVR-RQLESQRGARLE 337
SRHHH R DR RR+ RE +R R ++ E +R R E
Sbjct: 39 SRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREEREKEKERERARRRE 92
Score = 23.0 bits (47), Expect(2) = 0.52
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 267 RREQRDRHVESKGLRESALEQHD 199
RRE+RDR S+ RE+A E+ +
Sbjct: 90 RREERDREERSR-RREAAAEEEE 111
>02_01_0302 - 2021221-2023305
Length = 694
Score = 31.5 bits (68), Expect = 0.93
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 696 SAPVLHSAPVVHSTPXVHSAPLIHSAPGXHSEPXVXP 806
+ P HS P H+TP S P +AP HS P P
Sbjct: 502 TTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQSTP 538
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/84 (29%), Positives = 33/84 (39%)
Frame = -1
Query: 465 GTCDRRCGDPRRNMRTHTSREHGLRHDRSVRRQLESQRGARLEHVAQG*SVGLLAKHVYT 286
G C R PRR R+H DRS R + + H + +
Sbjct: 272 GECAR--SSPRRRRSRSHERDHDSERDRSDRDRGRHKDREHDRHAREDRDRDYRRSSYSS 329
Query: 285 KNVPRGRREQRDRHVESKGLRESA 214
+NV R RE+RDR + G R SA
Sbjct: 330 RNVDRQGRERRDRDSDRHG-RSSA 352
>05_03_0102 + 8414109-8414505,8416172-8416227
Length = 150
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 462 TCDRRCGDPRRNMRT-HTSREHGLRHDRSVRR 370
TC++R RRN+ H R HG HD + R+
Sbjct: 107 TCEKRQAQQRRNIAAAHAMRPHGRGHDLNFRK 138
>03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169
Length = 515
Score = 29.9 bits (64), Expect = 2.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 135 WEDTAWPWPSSITPPWQIAK 76
W+D WPSS + PW++ K
Sbjct: 227 WQDVLLLWPSSSSSPWELTK 246
>07_01_0408 -
3137705-3138017,3139361-3139371,3140693-3140770,
3141105-3141206,3141309-3141380,3141484-3141558
Length = 216
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 204 AAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAA 359
AA + H P+I+ A P AA + +H PV++ +P A AA
Sbjct: 9 AAAIAPHLVPVIRGATPFAPAAATAAAISLHLVPVIRGATPFSSAVAAAAAA 60
>10_08_0738 -
20212220-20212282,20212387-20212593,20212690-20212819,
20212919-20213089,20213311-20213433,20213517-20213618,
20214123-20214880
Length = 517
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 132 EDTAWPWPSSITPPWQIAKIEQTTAIL 52
E WP P S PP ++ K EQT ++
Sbjct: 136 EAARWPPPPSFQPPIEVIKAEQTAPLI 162
>04_04_0512 + 25806599-25808080
Length = 493
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +3
Query: 360 IPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKG 500
+P V +S+ + +HA ++ P GD +++H++ + + G
Sbjct: 392 LPEYVSNSEELSNHATFNHKVEEDSSSPAAGDRENEHDSSNSATIDG 438
>02_03_0167 - 15923872-15925683
Length = 603
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -2
Query: 452 AGVGILDGI*ELILRGSMVFDMIGVFDGNWNRSVVHDWSMLHRAEVL--DYWRSMYIRRM 279
AG+ +L+ + +++RGS + +FDG N+SVV W+ L +L DY +
Sbjct: 187 AGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVV-TWTALASGYLLRGDYLEVFDLFNR 245
Query: 278 FHGGGVN 258
G G N
Sbjct: 246 MRGVGKN 252
>10_01_0270 - 2876907-2877547,2877838-2878012
Length = 271
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Frame = +3
Query: 198 SHAAPVLTHAAP-LIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAV 374
S AP H P H P V++ P +Y H +PV + P P+ H A V
Sbjct: 174 SPPAPAAYHKPPPSYTHPAPPVYSYPTP--AYSHPTPVYKQPLPTPSPPIYHPPAEEKKV 231
Query: 375 EHSDHVE 395
D E
Sbjct: 232 AMQDDAE 238
>04_04_0776 -
28000220-28000337,28000760-28000872,28001194-28001289,
28001647-28001763,28002136-28002267,28002348-28002524,
28002660-28002837,28003270-28003373,28003922-28003996
Length = 369
Score = 28.7 bits (61), Expect = 6.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 32 RHLNMFFKIAVVCSILAICQGGVI 103
RH+ + + A VC +A+C+GG +
Sbjct: 22 RHVQILKRSAAVCGAVAVCRGGAV 45
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = -1
Query: 453 RRCGDPRRNMRTHTSREHGLRHDRSVRRQLESQRGARLEHVAQG*SVGLLAKHVY---TK 283
R+C R R+HT+ E R+V+ ++ + + S G LA V
Sbjct: 17 RKCAGNGRKWRSHTALELSTSSSRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSAS 76
Query: 282 NVPRGRREQRDRHVESKGLRESALEQHDSIXG 187
V + RE+ + V++ G+ E L + + + G
Sbjct: 77 RVTQRWREESHQGVQAGGVEEPPLFEAECVHG 108
>04_01_0471 + 6099768-6100094,6100384-6100416
Length = 119
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 67 LLDFGYLPRWCYRRGPRPC-CVFPKH 141
+L+F +LPR RRG R C V P H
Sbjct: 67 VLNFAFLPRTSLRRGARACRIVVPHH 92
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 379 TPIMSKTMLPRSMSSHIPSRIPTPAITSPNTKP 477
TP M+ P +M S + + TPA+T+P T P
Sbjct: 315 TPFMNPVTAP-TMPSPVTNPATTPAVTNPTTMP 346
>01_06_1222 - 35499069-35499287,35500319-35501734
Length = 544
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 302 ASSPTLQPCATCSSRAPRCDSNCRRTLRSCRRPCSR 409
+S+P PC C++ + + C + S RRPC+R
Sbjct: 7 SSTPLFSPC--CAAATAKLGAACPSSYGSRRRPCTR 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,757,165
Number of Sequences: 37544
Number of extensions: 545403
Number of successful extensions: 1849
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1844
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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