Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P15
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.36 
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.4  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    27   2.5  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.3  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    27   4.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   5.8  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   7.7  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   7.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +3

Query: 483  SRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPA--LPSREARPLPRQGSSAPTLPRGE 656
            S P S+ + +     L+R       +P+  ++AP   LPS +A P+P   ++ P      
Sbjct: 993  SAPLSKPVSTSPAAPLARV----PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTS 1048

Query: 657  TRAIPRRS*GARTA 698
            T  +P+ S GA +A
Sbjct: 1049 TPPVPKSSSGAPSA 1062



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +1

Query: 307  PTSPRPSPSSKASLXPYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVP 456
            P++P   P S +   P A   PVP    K  P P+  A   P  V    P
Sbjct: 992  PSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAP 1041


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 480 GSRPR--SRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTL 644
           GS PR  S A+ ++     S ++ S  + P Q  + PALPSR    LP +  S P++
Sbjct: 77  GSTPRTASPAVGNQDYSKPSYSQPS-YSQPSQPPKEPALPSRGTPSLPSRPGSRPSV 132


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 573 ARAPALPSREARPLPRQGSSAPTLPRGETRAIP 671
           A + A+P  EA+P P   S+A   P  E+  +P
Sbjct: 316 ATSDAVPPAEAKPEPVPASAAERAPTSESTTVP 348


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +3

Query: 489 PRSR-AIPSRKEGALSRTRTS*QALPRQGARAPALPSR-EARPLPR--QGSSAP 638
           PR R A P  +  A +R+ ++  ALP +    P  PSR +  P P   QG S+P
Sbjct: 2   PRRRSAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPPTAVQGGSSP 55


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 403  YPVKVAVPQPYEVVKHVPYHVKEYVKV 483
            Y +K+ VP P+  ++H P HV  Y ++
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISYTEL 2348


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 134 QLCFLSSSSHWQPLLLPAGKLSRA 63
           ++  L     WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 489 PRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPT 641
           PRS     R+   LS +R    A+    A  PA+P R A  LP  G+++ T
Sbjct: 366 PRSAPSTGRQPPPLSSSR----AVSNPPAPPPAIPGRSAPALPPLGNASRT 412



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 26/97 (26%), Positives = 40/97 (41%)
 Frame = +3

Query: 381 PS*EARALSRQGSRAPTLRGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QAL 560
           P   +RA+S   +  P + GR   A+   G    SR  +  +P+      S   ++  +L
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGN--ASRTSTPPVPTPP----SLPPSAPPSL 431

Query: 561 PRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIP 671
           P     +  + +  A PLP     AP LP G   A P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 304 IPTSPRPSPSSKASLXPYA-VDRPVPYPVEKHVPYPVKVAVPQP 432
           +PT P   PS+  SL P A    P+  P    +P    +A P P
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 373 VPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 480
           + YPV +  P  V   V Q YEV   V YH K+ +K
Sbjct: 304 ITYPVAETAPSLVVKVVNQDYEV--KVFYHYKDNIK 337


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 459 SREGVR*GSRPRSRAIPSRKEGALSRTRT-S*QALPRQGARAPALPSREARPLPRQGSSA 635
           S + +R GS  RSR+ PS + G   R+ + S  ++P     A  +P       PR+    
Sbjct: 335 SSQSLRLGSLHRSRS-PSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERD 393

Query: 636 PTLPRGETRAIPR 674
           PT+P    +   R
Sbjct: 394 PTIPPDSIKVYSR 406


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 316 PRPSPSSKASLXPYAVDRPVPYPVEKHVPYPVKV 417
           P PS S+ +S+ P A    V   V  + PYP ++
Sbjct: 216 PPPSDSANSSVTPIAAPLVVNGKVSGNPPYPAEI 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,126
Number of Sequences: 5004
Number of extensions: 52314
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)