Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_P14
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 121 1e-28
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 31 0.27
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.27
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.27
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.5
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.4
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.9
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 5.9
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 7.8
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 121 bits (292), Expect = 1e-28
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 1/178 (0%)
Frame = +2
Query: 107 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 286
+H + ATLK I RLKS+KNI+KIT+++K V+ K TRA+R ++A+ Y + + +
Sbjct: 24 FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83
Query: 287 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSR 463
+ A PE+ K L VA +SD+GLCG +H+ +S++IR L +P EN + +G+K R
Sbjct: 84 KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142
Query: 464 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSY 637
L R + IG P+F +A Q+++ IL ++ ++YNKF S VS+
Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSF 200
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 657 LYTKKSIESASKLTAYDSLDSDVLQSYTEFSLASXV 764
LYT K+I + L+AY+ D +V Q EF+ A+ +
Sbjct: 207 LYTTKAINESPNLSAYEVSD-EVHQPLMEFAFANAI 241
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 30.7 bits (66), Expect = 0.27
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 305 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 469
PPED P++L +T+ G+ GA+ TGV +N L E GA ++ +IC +
Sbjct: 70 PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128
Query: 470 LQRLYGKHIISVA 508
L +Y ++VA
Sbjct: 129 LMTVYSLGELAVA 141
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.7 bits (66), Expect = 0.27
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +3
Query: 504 LLMRSDVSHLLSWTQVSWPLL--SSPRDTSLVPERSFTTSSSLWSRTPSPTCPLYTKKSI 677
LL R+ S+ + + S L SS +SL S +SS+ + + SPT T S
Sbjct: 55 LLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSA 114
Query: 678 ESASKLTAYDSLDSDVLQSYTEFSLAS 758
S+S ++ + S S T SLAS
Sbjct: 115 TSSSLASSSTTSSSLASSSITSSSLAS 141
Score = 29.1 bits (62), Expect = 0.83
Identities = 33/121 (27%), Positives = 54/121 (44%)
Frame = +3
Query: 396 SATVSANLVLRTSR*SVWEINLAVSCRDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSP 575
S+ S++ + +S S + S + +TS L S S L+ + ++ L+S
Sbjct: 83 SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASS 142
Query: 576 RDTSLVPERSFTTSSSLWSRTPSPTCPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLA 755
TS S TTSSSL S + + T T S ++S L++ + +S S SL
Sbjct: 143 SITSSSLASSSTTSSSLASSSTNSTTSA-TPTSSATSSSLSSTAASNSATSSSLASSSLN 201
Query: 756 S 758
S
Sbjct: 202 S 202
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.27
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Frame = +3
Query: 465 VSCRDCTESTSLVLL---MRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSFTTSSSLWSR 635
V+ +CT STS++ + S S S TQVSW + TS S T+ +
Sbjct: 586 VTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTN 645
Query: 636 TPSPTCPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLASXVV 767
S T T S S+S T+ S S+ Y+ + +S V
Sbjct: 646 RTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTTSSSTV 689
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 424 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 290
ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 424 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 290
ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 4.4
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +3
Query: 489 STSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSFTTSSSLWSRTPSPTCPLYTK 668
S+S + S S LS + + P SS TSLV S +SSS S T S + L +
Sbjct: 51 SSSATAISSSSSSSPLSSSSFTSPA-SSSFITSLVSSSSQQSSSSSASLTSSSSATLTSS 109
Query: 669 KSIE--SASKLTAYDSLDSDVLQSYTEFSLAS 758
S S+S A S S ++ S + ++S
Sbjct: 110 SSASPTSSSSSHALSSSSSSLVASSSSSGMSS 141
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 480 CTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSF 608
C ++L L +S++ LS + +PL + RDT L+ +F
Sbjct: 172 CETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNF 214
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/71 (22%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +3
Query: 543 TQVSWPLLSS-PRDTSLVPERSFTTSSSLWSRTPSPTCP-LYTKKSIESASKLTAYDSLD 716
T S P+ +S P +S++ + T+S + + + +PT + + +I S+S ++A ++
Sbjct: 93 TSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISA-STIT 151
Query: 717 SDVLQSYTEFS 749
+ ++ T+F+
Sbjct: 152 TTIISGSTQFT 162
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 567 SSPRDTSLVPERSFTTSSSLWSRTPSPTCPLYTKKSIESASKLTAYDSLDS 719
SS ++ P S TTSSS S + +P T SAS + S S
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASS 190
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 338 AMTSDRGLCGAVHTGVSKVIRNRLSE 415
A+ SD +C V TG+S ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,532,457
Number of Sequences: 5004
Number of extensions: 75424
Number of successful extensions: 244
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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