Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P11
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   3.7  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.5  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
 Frame = +3

Query: 243 DRGLRKKLTQDAIPEKTPRKP--SKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDL-F 413
           D   R++     I  + PR    S+R       ++D +  + + +R   +   P+ +  +
Sbjct: 23  DEEPRRERGSGGIGREDPRGHYGSERPRRRRRDESDFRRHRESRERSYREDERPRRERRY 82

Query: 414 TTYQPWVIQTYGDQAKTKTITLKKYARILRTLRGEECNSSDSSKFRFWVKAKGFYVGKPP 593
             Y+P  ++ Y    ++++    +  R +R++  E     D +    W + +  +  KPP
Sbjct: 83  DDYEPRSLR-YSSVGRSRSPPPSR-ERSVRSIEQELEQLRDVTPINQWKRKRSLWDIKPP 140

Query: 594 GYDAKPAD 617
           GY+   AD
Sbjct: 141 GYELVTAD 148


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +3

Query: 225 AAAMISDRGLRKKLT-QDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPK 401
           +++ +S + + +K T   AIP+  P+ PS R+ T  A+ +  K  +  N  P +  G+  
Sbjct: 407 SSSKVSAKSVSRKPTGAPAIPKLPPKHPS-RQPTVRATPSTGKQIEPPNDEPSI--GNEL 463

Query: 402 LDLF 413
           L LF
Sbjct: 464 LPLF 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,641
Number of Sequences: 5004
Number of extensions: 51032
Number of successful extensions: 189
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)