Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P11
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.24 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.8  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   8.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   8.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 213 QNKMAAAMISDRGLRKKLTQDAIPEKTPRKPSKRKSTA----GASKADKKNEQNN 365
           +NK    +I    + K+ + ++  E TP+K  K  +T      + K  KK+E+ N
Sbjct: 764 RNKALLPVIKPANVNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKN 818


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 246 RGLRKKLTQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNN 368
           R   K+ +QD    +T ++P    S +   K    N  NNN
Sbjct: 60  RETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNN 100


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 246 RGLRKKLTQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNN 368
           R   K+ +QD    +T ++P    S +   K    N  NNN
Sbjct: 60  RETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNN 100


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 297 RKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTT 419
           RK SK++   G   AD  +E+  + RP  +T D     +TT
Sbjct: 27  RKLSKKQQMLGIW-ADDSDEEELSARPSFKTFDKGPKNYTT 66


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 400 NSICSRRTSPG*YKRTATRQKPRRLH*KNTRGSCVRYAARSVTVRTA 540
           N  CS    PG   +T+TR+ PR +   N    C     R V + +A
Sbjct: 683 NCNCSMDWLPGINNQTSTREYPRIMDLDNV--MCRTSGPRGVAIVSA 727


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 514 PRSVRKIRAYFFNVIVLVFAWSPYVCITQG 425
           PR +RK +  F  ++  V       CIT+G
Sbjct: 408 PRLLRKRKELFIAIVCFVSYLIGLFCITEG 437


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 514 PRSVRKIRAYFFNVIVLVFAWSPYVCITQG 425
           PR +RK +  F  ++  V       CIT+G
Sbjct: 461 PRLLRKRKELFIAIVCFVSYLIGLFCITEG 490


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 533 GQLQVSFLGQSEGFLR 580
           GQ    F+G S+GF R
Sbjct: 28  GQTDEGFVGDSQGFFR 43


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 327 RPSICVWTAFAGSSP 283
           RPS C W   A +SP
Sbjct: 8   RPSYCTWELNATNSP 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,974
Number of Sequences: 438
Number of extensions: 3842
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)