Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_P10
(923 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 38 0.013
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 37 0.023
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 34 0.12
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 34 0.12
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 34 0.12
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 34 0.12
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 34 0.12
Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 32 0.50
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 32 0.50
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 32 0.67
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 32 0.67
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 31 1.5
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 30 2.7
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 30 2.7
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81536-9|CAB04362.1| 733|Caenorhabditis elegans Hypothetical pr... 29 6.2
L23649-3|AAA27909.2| 601|Caenorhabditis elegans Tyrosinase prot... 29 6.2
Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical pr... 28 8.2
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 28 8.2
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 37.5 bits (83), Expect = 0.013
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +2
Query: 296 ISNLPYDVEESAIAELFADL-KVTNLRL--PREGDRLKGHGYVDFEDRENLIEAL-NMPD 463
+ N+ YDV E I +F+ V ++++ RE + KG+G+++F D + A+ N+
Sbjct: 22 VGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNG 81
Query: 464 LTIGGRRVRIE 496
+ GR +R++
Sbjct: 82 YELSGRILRVD 92
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 36.7 bits (81), Expect = 0.023
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +2
Query: 281 PFIAHISNLPYDVEESAIAELFADLKVTNLRLP-REGDRLKGHGYVDFEDRENLIEALNM 457
P ++ LPYD ++ AIA F+ L+ ++++ E R G +F++ +L AL+
Sbjct: 324 PLRVYMRGLPYDADDHAIAAFFSPLRCHSVKIGINETGRPSGDAIAEFDNYNDLQVALSR 383
Query: 458 PDLTIGGRRVRI 493
+ +G R V +
Sbjct: 384 NNQRMGRRYVEL 395
Score = 35.1 bits (77), Expect = 0.071
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +2
Query: 269 PHRPPFIAHISNLPYDVEESAIAELFADLKVTNLRLPREGDRLKGHGYVDFEDRENLIEA 448
P R +I + LP++ E I E FA L + ++ R G YV+F++ E +A
Sbjct: 60 PPRSQYI-RLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGRPNGEAYVEFKNTEEAGKA 118
Query: 449 LNMPDLTIGGRRVRI 493
+ I R + +
Sbjct: 119 MENDRKEISNRYIEV 133
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 293 HISNLPYDVEESAIAELF---ADLKVTNLRLPREGDRLKGHGYVDFEDRENLIEALNMPD 463
++ N+ Y I + F + ++ R KG YV+F ++E + AL M D
Sbjct: 81 YVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTD 140
Query: 464 LTIGGRRVRIE 496
+ GR+++++
Sbjct: 141 SLLRGRQIKVD 151
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +2
Query: 263 SIPHRPPFIAHISNLPYDVEESAIAELF---ADLKVTNLRLPREGDRLKGHGYVDFEDRE 433
+ PH ++ DV E + F D+ ++ + E + +G G+V+F+ E
Sbjct: 4 NFPHNRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAE 63
Query: 434 NLIEAL-NMPDLTIGGRRVRIEVSTP 508
+ A+ NM + + G+ +R+ + P
Sbjct: 64 DAAMAIDNMNESELFGKTIRVNFARP 89
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 296 ISNLPYDVEESAIAELF---ADLKVTNLRLPREGDRLKGHGYVDFEDRENLIEALNMPDL 466
+ LPY + + E F D++ + R + +G+G+V +DR + A P+
Sbjct: 39 VGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNP 98
Query: 467 TIGGRRVRIEVS 502
I GR+ + ++
Sbjct: 99 IIDGRKANVNLA 110
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 305 LPYDVEESAIAELFADLKVTNLRLPREGDRLKGHGYVDFEDRENLIEALNMPDLTIGGRR 484
LP++ E + + F + + +L +PR R G V F + E+ AL +G R
Sbjct: 12 LPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDREHLGSRY 71
Query: 485 VRI 493
+ +
Sbjct: 72 IEV 74
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 305 LPYDVEESAIAELFADLKVTNLRLPREGDRLKGHGYVDFEDRENLIEALNMPDLTIGGRR 484
LP++ E + + F + + +L +PR R G V F + E+ AL +G R
Sbjct: 12 LPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDREHLGSRY 71
Query: 485 VRI 493
+ +
Sbjct: 72 IEV 74
>Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical
protein C01F6.5 protein.
Length = 223
Score = 33.5 bits (73), Expect = 0.22
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Frame = +2
Query: 182 YASHTRAPVVLPSAS-RAARGGLAVDDESIP--HRPPFIAHISNLPYDVEESAIAELFAD 352
+++ T P P+A R GG+ D SIP ++SNL + V + +LFA+
Sbjct: 35 FSTGTAGPSRRPTAQPRRQSGGIRTVDRSIPANENREVRINLSNLAHTVHSGDLRQLFAE 94
Query: 353 LKVTNLRLP-REGDRLKGHGYVDFEDR--ENLIEALNMPDLTIGGRRVRIEV 499
K+ N+ + E + G G V R + LI+ +++ G+ ++ +
Sbjct: 95 FKIRNVSVNFNEHGKPVGTGDVTLPKRHADRLIQ--KFAGVSLDGKEIKFAI 144
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 32.3 bits (70), Expect = 0.50
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 293 HISNLPYDVEESAIAELFADL-KVTNLRLPREGDRLKGHGYVDFEDRENLIEA-LNMPDL 466
H+SN+P+ E + +F + V ++ + KG G+V ++ ++ A
Sbjct: 103 HVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGT 162
Query: 467 TIGGRRVRIEVST 505
TI GRRV + ++T
Sbjct: 163 TIEGRRVEVNLAT 175
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 32.3 bits (70), Expect = 0.50
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 293 HISNLPYDVEESAIAELFADL-KVTNLRLPREGDRLKGHGYVDFEDRENLIEA-LNMPDL 466
H+SN+P+ E + +F + V ++ + KG G+V ++ ++ A
Sbjct: 103 HVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGT 162
Query: 467 TIGGRRVRIEVST 505
TI GRRV + ++T
Sbjct: 163 TIEGRRVEVNLAT 175
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 31.9 bits (69), Expect = 0.67
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -3
Query: 261 SSSTAKPPRAAREAEGSTTGARVCDAYPKFSVSSSAAFAQL 139
S+STA P +A EAE R+ D P+ + SSS +F L
Sbjct: 406 SNSTASSPSSASEAECKQIAIRIPDPIPEEAPSSSKSFGAL 446
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 31.9 bits (69), Expect = 0.67
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -3
Query: 261 SSSTAKPPRAAREAEGSTTGARVCDAYPKFSVSSSAAFAQL 139
S+STA P +A EAE R+ D P+ + SSS +F L
Sbjct: 406 SNSTASSPSSASEAECKQIAIRIPDPIPEEAPSSSKSFGAL 446
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = +2
Query: 239 GGLAVDDESIPH--RPPFIAHISNLPYDVEESAIAELFADL-KVTNLRLPREG--DRLKG 403
GG +D S+ F +L +V + +A+ F ++ RE ++ KG
Sbjct: 186 GGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKG 245
Query: 404 HGYVDFEDRENLIEAL-NMPDLTIGGRRVRIEVS 502
+G+V F D E+ + A+ M +G R +++ S
Sbjct: 246 YGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKS 279
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 293 HISNLPYDVEESAIAEL-FADLKVTNLRLPREGDRLKGHGYVDFEDRENLIEA-LNMPDL 466
++SN+P+ E +A + FA +V ++ + KG G+V + E+ +A + +
Sbjct: 54 YVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALHES 113
Query: 467 TIGGRRVRIEVSTP 508
+ GR + + +TP
Sbjct: 114 HVQGRIIEVRRATP 127
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 293 HISNLPYDVEESAIAEL-FADLKVTNLRLPREGDRLKGHGYVDFEDRENLIEA-LNMPDL 466
++SN+P+ E +A + FA +V ++ + KG G+V + E+ +A + +
Sbjct: 54 YVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALHES 113
Query: 467 TIGGRRVRIEVSTP 508
+ GR + + +TP
Sbjct: 114 HVQGRIIEVRRATP 127
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +2
Query: 296 ISNLPYDVEESAIAELFADL-KVTNLRLPRE--GDRLKGHGYVDFEDRENLIEAL-NMPD 463
++NLP ++ E + +LF + +V + + R+ KG +V FE R++ A+ + D
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 464 LTIGGRRVRIEVSTP 508
+ + +++E + P
Sbjct: 240 IRMYHMVLKVEWTRP 254
>Z81536-9|CAB04362.1| 733|Caenorhabditis elegans Hypothetical
protein F40D4.12 protein.
Length = 733
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 79 MDQSRHHKHYSRTDHNRNYQQLGE 150
+D+S+H+KH +T HN Y L E
Sbjct: 350 LDESKHNKHSYQTAHNEWYNMLCE 373
>L23649-3|AAA27909.2| 601|Caenorhabditis elegans Tyrosinase protein
1 protein.
Length = 601
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 291 AINGGRCGIDSSSTAKPPRAAREAEGSTTGARVC 190
A N G G+ S + PPR A A+G A +C
Sbjct: 57 AFNAGAPGVQGFSPSNPPRFAPSAQGCMNIACIC 90
>Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical
protein C14B1.5 protein.
Length = 396
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 528 EVDALIEIGTMTLSVQWVTGAPDPALY 608
EVD +++ LS+ W T P P LY
Sbjct: 314 EVDCWVQVACPRLSIDWGTQFPKPLLY 340
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 28.3 bits (60), Expect = 8.2
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Frame = +2
Query: 296 ISNLPYDVEESAIAELFADL-KVTNLRLPRE---GDRLKGHGYVDFEDRENLIEAL-NMP 460
I NL +V ++ + E+F+ + N+ LP + +G+GYV++++ E+ +++ +M
Sbjct: 137 IKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMD 196
Query: 461 DLTIGGRRVRIEVSTPXXXXXXXXXXXXXXXXXXPER-TMGDWRSGPRAVPTRR 619
I G V +E++ P R M R G R+ P R
Sbjct: 197 GGQIDGMAVHVEMTIGRQSVPFQRRSSPFRRRSPPPRDRMSPMRRGGRSPPPHR 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,666,507
Number of Sequences: 27780
Number of extensions: 327106
Number of successful extensions: 999
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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