Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P09
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   4.3  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   7.5  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    25   10.0 

>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 224 QDSTLTGVTCLNMFEVQQKKHYADQN 301
           +D+   G+TCL ++E+Q  +H   +N
Sbjct: 105 EDTVEAGLTCLYIYEIQLDEHIRGRN 130


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
 Frame = -3

Query: 657 IHSLMSWFTVLVPYNSS----SSHWLKNDSCRN----YPLVMTDPLLRS--KFHLRFALA 508
           ++SL+SW  +   +NS     S+ +L+ D C+N    Y ++    L  +   FHL  A  
Sbjct: 53  VNSLLSWCMLSSWFNSKLSKLSAGYLQFD-CQNDGKCYSVIAVHRLSFTLVMFHLFLAFI 111

Query: 507 LISCNSLLRVVFPLVNAM 454
           L  CN+  RV   + N +
Sbjct: 112 LSLCNTRSRVAIKIQNGL 129


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 651 SLMSWFTVLVPYNSSSSHWLKNDSCRNYP-LVMTDPLLRSKFHLRFALALISCNSLLRVV 475
           SL+ + ++ V Y        + +    YP L + DP+ ++ F+   ++   SC  +L++V
Sbjct: 91  SLLVYLSIAVSYMLWVEKCYQMNKFYAYPILAILDPIKKTIFYTVASIISFSCYIVLKMV 150

Query: 474 FP 469
            P
Sbjct: 151 HP 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,166
Number of Sequences: 5004
Number of extensions: 62013
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)