Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_P09
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0042 - 12731228-12731362,12731984-12732046,12732136-127322... 33 0.28
07_01_0116 - 855122-855352,856733-857059,857095-858481,858636-85... 30 2.6
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.6
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632... 30 2.6
12_02_0544 - 20179129-20179336,20179443-20179594,20179706-201798... 29 6.0
11_06_0130 - 20408835-20411771 28 7.9
11_01_0213 + 1679792-1679838,1679959-1679986,1680331-1680573,168... 28 7.9
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 28 7.9
>07_03_0042 -
12731228-12731362,12731984-12732046,12732136-12732207,
12732783-12732855,12732937-12733005,12733375-12733439,
12733677-12734087,12734186-12734230,12734338-12734413,
12734555-12734629,12735101-12735207,12736573-12736635
Length = 417
Score = 33.1 bits (72), Expect = 0.28
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 145 RNQKVTSFYLVFNKIMSTLKLTSEVRSGLYSHWRD 249
++Q TS Y +FNK+ STL S V SG ++ RD
Sbjct: 159 KSQAGTSGYTLFNKLRSTLSSASPVLSGAFAKLRD 193
>07_01_0116 -
855122-855352,856733-857059,857095-858481,858636-858895
Length = 734
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = -3
Query: 666 SATIHSLMSW-FTVLVPYNSSSSHWLKNDS---CRNYPLVMTDPLLRSKFHLRFALALIS 499
SA + SL+S FTVL Y+++ HWL+ S + P V+ D +K + + L+
Sbjct: 261 SAAVWSLVSAAFTVLTAYSTTKLHWLQGGSTVVVQGGPTVVGD----NKADIFITMLLLV 316
Query: 498 CNSLLRVVFPLV 463
+LL ++ PL+
Sbjct: 317 SIALLELLQPLL 328
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 293 DQNTSSGTPQERECSIRKSCNND-SVTSMEDLSHEEIVTSYVLA 421
D +SS T QE +++K CN D ++S+E E + LA
Sbjct: 480 DCKSSSATQQESSMAVKKDCNTDMELSSLEPQEDENSIAMEFLA 523
>01_07_0187 +
41862342-41862622,41862730-41862912,41863236-41863299,
41863547-41863756,41863850-41864035,41864180-41864478,
41864584-41864731,41864798-41864863,41864945-41865217,
41865523-41865741,41865864-41866013
Length = 692
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -2
Query: 397 FFVAQIFHRGNRVVITRLTYAAFTFLWRTTTSILICIMFFLLYFEHVQTRHASESRV 227
F V+ + NR+ I +L + + LW + L I F+++Y H + + S R+
Sbjct: 131 FTVSNVARGSNRLAILQLPFTLLSRLW-VHFACLCFISFYVVYLLHKEHKEMSSRRI 186
>12_02_0544 -
20179129-20179336,20179443-20179594,20179706-20179864,
20179989-20180232,20180719-20180835,20181730-20181905
Length = 351
Score = 28.7 bits (61), Expect = 6.0
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = -2
Query: 589 KRFVSELPTRHDRSIIAIEVSLEICTCLNFLQ*LVTCCISVSKRHVMTSTVKLGNMSQNV 410
+R S+ R D S++AI S + T +++ L T C+ + S L + +
Sbjct: 212 ERDFSKWKLRFDISLLAILYSGVMVTGVSYY--LQTWCLEMRGPMFFASWTPLCFVF-TI 268
Query: 409 RCDDFFVAQIFHRGNRVVITRLTYAAFTFLW 317
C FF+ +I H G+ + L + +T LW
Sbjct: 269 FCSSFFLGEIVHLGSILGGILLVGSLYTMLW 299
>11_06_0130 - 20408835-20411771
Length = 978
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +3
Query: 366 LPRWKI*ATKKSSHLTFWLMLPSLTVDVITWRLLTEIQHVTSYCKKLRQVQISSETSI 539
LP+ + +TKK H ++L +LTV +++ + + ++ C K R+ ++ + TSI
Sbjct: 715 LPQCSLKSTKKKKHQ---ILLIALTVCLVSTLAIFSLLYMLLTCHKRRKKEVPAMTSI 769
>11_01_0213 +
1679792-1679838,1679959-1679986,1680331-1680573,
1680705-1680863,1680975-1681126,1681235-1681442
Length = 278
Score = 28.3 bits (60), Expect = 7.9
Identities = 24/91 (26%), Positives = 41/91 (45%)
Frame = -2
Query: 589 KRFVSELPTRHDRSIIAIEVSLEICTCLNFLQ*LVTCCISVSKRHVMTSTVKLGNMSQNV 410
+R S R D S++AI S + T +++ L T C+ + S L + +
Sbjct: 139 ERDFSRWKLRFDISLLAILYSGVMVTGVSYY--LQTWCLEMRGPMFFASWTPLCFVF-TI 195
Query: 409 RCDDFFVAQIFHRGNRVVITRLTYAAFTFLW 317
C FF+ +I H G+ + L + +T LW
Sbjct: 196 FCSSFFLGEIVHLGSILGGILLVGSLYTMLW 226
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 287 YADQNTSSGTPQERECSIRKSCNND-SVTSMEDLSHEE 397
+ D SSG+P E S+ K C+ S TS D ++E
Sbjct: 523 HEDMQASSGSPDGSEPSVNKICDGSISWTSRNDFEYKE 560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,454,168
Number of Sequences: 37544
Number of extensions: 364803
Number of successful extensions: 741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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