Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P09
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative guan...    29   3.1  
AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    29   4.1  

>AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative
           guanylate-binding protein protein.
          Length = 573

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 478 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVAQIFHRGNRVVI 353
           C ++     M S+V++ N+SQN++ DD    Q+F    R+ +
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLFTEYGRLAL 212


>AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2b protein.
          Length = 535

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 478 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVAQIFHRGNRVVI 353
           C ++     M S+V++ N+SQN++ DD    Q+F    R+ +
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLFTEYGRLAL 212


>AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2a protein.
          Length = 573

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 478 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVAQIFHRGNRVVI 353
           C ++     M S+V++ N+SQN++ DD    Q+F    R+ +
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLFTEYGRLAL 212


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -2

Query: 400 DFFVAQIFHRGNRVVITRLTYAAFTFLWRTTTSILICIMFFLLYFEHVQTRHASESRVL 224
           DF     FH  N +  T L +    FLW   +  L+CI   +  F HV+ ++  + +++
Sbjct: 45  DFCEQTTFHGVNMIFTTSLYWV--RFLWVVVS--LVCICLCMYSFSHVKDKYDRKEKIV 99


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -2

Query: 400 DFFVAQIFHRGNRVVITRLTYAAFTFLWRTTTSILICIMFFLLYFEHVQTRHASESRVL 224
           DF     FH  N +  T L +    FLW   +  L+CI   +  F HV+ ++  + +++
Sbjct: 45  DFCEQTTFHGVNMIFTTSLYWV--RFLWVVVS--LVCICLCMYSFSHVKDKYDRKEKIV 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,553,474
Number of Sequences: 27780
Number of extensions: 355103
Number of successful extensions: 884
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)