Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_P07
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 135 8e-33
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 134 1e-32
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 101 2e-22
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 48 2e-06
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 38 0.002
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 33 0.065
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 32 0.11
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 31 0.26
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 29 0.61
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 29 1.1
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 2.5
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 27 3.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.2
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 4.3
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 27 4.3
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 26 5.7
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 26 5.7
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 26 7.5
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 26 7.5
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 7.5
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 25 9.9
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 25 9.9
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 135 bits (326), Expect = 8e-33
Identities = 72/130 (55%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
Frame = +3
Query: 390 LETHEGCTHEVAIPPNQEYAPLLPLTTE--PVKQYSFILDPFQKEAILCIDNLQSVLVSA 563
+E H+V+IPPN +Y P+ + P + Y F LDPFQ +I CI+ +SVLVSA
Sbjct: 161 VELRHQVRHQVSIPPNYDYVPISKHKSPIPPARTYPFTLDPFQAVSIACIERQESVLVSA 220
Query: 564 HTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSXEFMMLV*XLVMYYQSP- 740
HTSAGKTVVAEYA+A SL++KQRVIYT+PIKALSNQKYRE EF + +P
Sbjct: 221 HTSAGKTVVAEYAVAQSLRDKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINPD 280
Query: 741 ASCLIMTTEI 770
A+CL+MTTEI
Sbjct: 281 ATCLVMTTEI 290
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 134 bits (325), Expect = 1e-32
Identities = 74/124 (59%), Positives = 91/124 (73%), Gaps = 5/124 (4%)
Frame = +3
Query: 414 HEVAIPPNQEYAPL---LPLTTEPVKQYSFILDPFQKEAILCIDNLQSVLVSAHTSAGKT 584
H+V +P + +Y PL +P + P K Y F LDPFQ AI C++ ++SVLVSAHTSAGKT
Sbjct: 96 HKVVVPDDYDYIPLNKHIP-SDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKT 154
Query: 585 VVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSXEF--MMLV*XLVMYYQSPASCLIM 758
V+AEYAIA +LKN+QRVIYT+PIK+LSNQKYRE EF + L+ V S ASCLIM
Sbjct: 155 VIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELLSEFGDVGLMTGDVSINPS-ASCLIM 213
Query: 759 TTEI 770
TTEI
Sbjct: 214 TTEI 217
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 101 bits (241), Expect = 2e-22
Identities = 59/129 (45%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Frame = +3
Query: 387 TLETHEGCTHEVAIPPNQEYAPLLPLTTEPVKQYSFILDPFQKEAILCIDNLQSVLVSAH 566
TL H+ + + + L E + F LD FQKEAI ++ SV V+AH
Sbjct: 244 TLNLHKQPDYAHVVDSSAPIENFQQLVPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAH 303
Query: 567 TSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSXEFMMLV*XLVMYYQSP-A 743
TSAGKTVVAEYAIAL+ K+ + IYT+PIKALSNQK+R+F +F + +P
Sbjct: 304 TSAGKTVVAEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKHKFEDVGILTGDVQVNPEG 363
Query: 744 SCLIMTTEI 770
SCL+MTTEI
Sbjct: 364 SCLLMTTEI 372
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 47.6 bits (108), Expect = 2e-06
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 474 PVKQYSFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQR--VIYTT 647
P + +F D +Q+E + +D +SV V A TS+GKT ++ YA+ L++ VIY
Sbjct: 728 PDSRVAFDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVA 787
Query: 648 PIKALSNQKYREFSXEF 698
P KAL NQ E F
Sbjct: 788 PTKALVNQLSAEVYARF 804
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +3
Query: 546 SVLVSAHTSAGKTVVAEYAIALSLKN--KQRVIYTTPIKALSNQKYREF 686
++ V A T +GKT+ AE A +L N K +V+Y P+KAL ++ +++
Sbjct: 1152 NIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDW 1200
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 32.7 bits (71), Expect = 0.065
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 546 SVLVSAHTSAGKTVVAEYAIA--LSLKNKQRVIYTTPIKALSNQKYREFSXEF 698
SV + A +GKTV AE A+ S ++ +Y PI+ + +++Y E+ +F
Sbjct: 1382 SVFIGAPNGSGKTVCAELALLHHWSQEDYGTAVYIAPIQEIVDRRYEEWYGKF 1434
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Frame = +3
Query: 543 QSVLVSAHTSAGKTVVAEYAIALSLKNKQR-----------VIYTTPIKALSNQKYREFS 689
+++L+ A T AGKT VA I L+ R ++Y P+KAL + FS
Sbjct: 536 ENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFS 595
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 31.9 bits (69), Expect = 0.11
Identities = 22/100 (22%), Positives = 41/100 (41%)
Frame = +2
Query: 104 ENLQSYLFKMSDINSLFDCFDETPITEAAIQLPNVKNVEKPNLEELTAAGNKRAHDDIQY 283
EN+ + +++ S+ D + I P V+ N E T +K+ +
Sbjct: 210 ENITALQKNVANFTSIKDSGGRDNLYIQTISKPRRSYVQN-NKSEQTIKPSKQNKQKEEK 268
Query: 284 ADTSVSKKPREEEEDSELITDINVDLLQSRYSDTHARNSR 403
S KP +EDSEL D+ + +L ++ +N +
Sbjct: 269 KTISQGNKPNSRDEDSELSIDVPLSMLNRSLANNSQKNKK 308
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 30.7 bits (66), Expect = 0.26
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 110 LQSYLFKMS-DINSLFDCFDETPITEAAIQLPNVKNVEKPNLE 235
L+S L+ + DINS+ D D+T +TE LPN ++ P LE
Sbjct: 1191 LESLLYGVDRDINSVMDALDKTYMTEVIQNLPN--GLDTPLLE 1231
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 29.5 bits (63), Expect = 0.61
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +2
Query: 98 NIENLQSYLFKMSDINSLF--DCFDETPITEAAIQLPNVKNVEKPNLE-ELTAAGNKR 262
N++ L S + +IN L + ++ PIT+ A + N+KN++ NLE + NKR
Sbjct: 285 NLDALNSCTMENHEINELTATNKMNDGPITKCARETINIKNLKTSNLERNQNSPKNKR 342
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 266 HDDIQYADTSVSKKPREEEEDSELITDINVDLLQS 370
H D+ + + + K R EEE S L+ +I++D ++S
Sbjct: 303 HRDLHWGNILIRKADRSEEEVSFLLNEISLDDIES 337
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 543 QSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIK-ALSNQ 671
Q+++VS + AGKTV A+Y I L + Q V + +K ++ NQ
Sbjct: 153 QTIIVSGESGAGKTVAAKY-IMRYLTSVQGVDHNGVVKRSVENQ 195
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +3
Query: 504 PFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQR---VIYTTPIKALSNQK 674
P Q+EAI + N + V+ A T +GKT + L N + P + L+ Q
Sbjct: 71 PIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQI 130
Query: 675 YREF 686
+F
Sbjct: 131 SEQF 134
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +3
Query: 480 KQYSFILDPFQKEAIL-----CIDNLQSVLVSAHTSAGKTVVAEY 599
+Q +I+ PF ++ +L C + +L+ TS+GKT + EY
Sbjct: 869 EQEHYIITPFVQKNLLNIARACSTRMFPILIQGPTSSGKTSMIEY 913
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 429 PPNQEYAPLLPLTTEPVKQYSF 494
PP +EY+P + L T PV + S+
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESY 238
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.3
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = +2
Query: 155 DCFDETPITEAAIQLPNVKNVEKPNLEELTAAGNKRAHDDIQYADTSVSKKPREEEEDSE 334
D F +EAA + +KN+ N +E + N+ DDI S ++ R EE S+
Sbjct: 342 DTFSALRYSEAARR---IKNISNINCKEAYSTNNEGELDDILTTLESDREQLRRHEEHSQ 398
Query: 335 LITDINVDLLQSRYSDTHARNSR 403
+ ++ HA S+
Sbjct: 399 KLLKFIEEIRNDYEERIHALESQ 421
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 173 PITEAAIQLPNVKNVEKPNLEELTAAGNKRAHDDIQYADTSVSKKPREEEE 325
PIT+ A++ E N + N+RA+ A + KK EE E
Sbjct: 154 PITQEAVEEAKPITEEAKNFNAFSTLSNERAYARYAGARAAFQKKRAEEAE 204
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 11 KIKQQNLERESEMYSKI*TDKLINGMY*INIENLQS 118
+++Q + E+ S +YS + + L G Y I + +L+S
Sbjct: 741 RLQQMDEEKISRLYSDMRRESLATGSYPITVRHLES 776
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 74 LINGMY*INIENLQSYLFKMSDINSLF 154
L++G+ NIE +++Y+ K DIN LF
Sbjct: 916 LVDGL--ANIELVEAYINKSGDINDLF 940
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 366 NLVIVIHTLETHEGCTHEVAIPPNQEYAPLLPLTT 470
NL +HTLE HE +++ P++E P+L T+
Sbjct: 313 NLNQRLHTLEGHEDIVTKISFSPHEE--PILASTS 345
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.8 bits (54), Expect = 7.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = -2
Query: 217 NIFNIWQLNRSFSYWCF 167
N++ W++NR WC+
Sbjct: 993 NVYTTWKMNRCSDNWCY 1009
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/55 (20%), Positives = 32/55 (58%)
Frame = +2
Query: 32 ERESEMYSKI*TDKLINGMY*INIENLQSYLFKMSDINSLFDCFDETPITEAAIQ 196
E++++ ++ + ++N ++++N + +S +++LF+CFD P+ + Q
Sbjct: 266 EQQTQKFANVLLQIILNSRKNLSLQNYVGFF--VSVLDALFECFD-VPVVQYMYQ 317
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = -3
Query: 615 VIELWHTQQPLFCQQTCELIQVQIVNYLYTILLLFETDP 499
+ E+ +QP++CQ C L ++ +L++ +L ++ +P
Sbjct: 172 IFEVDGQRQPIYCQNLCLLAKM----FLHSKMLYYDVEP 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,240
Number of Sequences: 5004
Number of extensions: 62912
Number of successful extensions: 232
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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