Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P02
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    34   0.029
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    29   0.63 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    29   1.1  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    28   1.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.9  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.3  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   4.4  
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||...    26   5.8  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   5.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   7.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   7.7  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 33.9 bits (74), Expect = 0.029
 Identities = 15/62 (24%), Positives = 36/62 (58%)
 Frame = +3

Query: 396 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDQQMHEGGDAPLLQRI 575
           EE++E + +   D+  D + ME  +R+  + +++LF + + +   +++ +   A LL+ I
Sbjct: 517 EEDEEDVDEDELDLMTDEQRMEEGRRMFQIFAARLFEQRVLQAYREKVAQQRQAKLLEEI 576

Query: 576 KE 581
           +E
Sbjct: 577 EE 578


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 741 TKXIHQPVHGGQLAAEYLLPLLIPYAFDTSDVVD 640
           T  + +  HGG L  +YL+ +  P  F  SD +D
Sbjct: 484 TNTVWEAAHGGMLGIKYLVAVKYPLFFSHSDYLD 517


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 572 PLQERSVAAL-VHLLVEDPFQFFAEQLRGHESF-DALPAFHFADIGVDVGRTLLQAL 408
           P+ +R  A L +  +V+D FQ   E+L G  S+ D    FHF+DI +  G  +   L
Sbjct: 58  PVSDRKDALLNIPTVVDDEFQH-TEELAGVSSWSDFFYLFHFSDIPLIFGTLIFTCL 113


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 447 VREMERRKRVEALMSSKLFREELERVLDQQMHEGG 551
           +++ + RK+V A+ + KL +E +E+    +M +GG
Sbjct: 484 LKDSQERKKVSAIRAVKLMKEIVEKKQKLEMEKGG 518


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = -3

Query: 429 PDAASSARLPPRWTGARCRSGSSLSPSQPFRQLESIDLSSKTWVSNP 289
           P + SSA LP   +     S SSLS S P        LSS T  S P
Sbjct: 141 PSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQP 187


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +3

Query: 357 SETIPNGTGPLSTEEEDERLKQ--RPADIDADVREMERRKRVEALMSSKLFREELERVLD 530
           S T+P G G  S + E    +    P D D+       +   E L +SKL  E   + L 
Sbjct: 78  SPTLPPGFGMASDDSEASLAENDLHPLDNDSTRTSKTLKNSSEVLTASKLTDEGNSKPLL 137

Query: 531 QQMHEGGDAPLLQRIKEMVGG 593
           ++      +P+L   K+++ G
Sbjct: 138 EEGEVAVSSPILLDSKDVIMG 158


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/74 (27%), Positives = 29/74 (39%)
 Frame = +3

Query: 270 PEGLVLPDY*PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADV 449
           P   V P+Y P + +      + G  +TD  T P G GP  T   +      PA I    
Sbjct: 294 PSITVPPNYIPNTAMMGPSYSSFG--DTDPRTYPAGMGPNPTAARNGFYPPTPAQIHQLK 351

Query: 450 REMERRKRVEALMS 491
            + +  +R    MS
Sbjct: 352 AQQQHLQRQSKQMS 365


>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/66 (21%), Positives = 36/66 (54%)
 Frame = +3

Query: 336 VGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREEL 515
           +G  + +SE        +   E +E+L +R    + +++E+E+++++EA +     +E+ 
Sbjct: 84  LGKFQQESEREQKSARKVKRAELEEKLAKRR---EQELQELEKQEKIEAEILESRLQEQR 140

Query: 516 ERVLDQ 533
           +  LD+
Sbjct: 141 KVALDE 146


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = +3

Query: 396 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDQQMHEGGDAPLLQRI 575
           E +D+ LK+    I +     +++KR++  + +KL +EE+  ++ +   E  D  LL   
Sbjct: 71  ELKDQLLKENEGSISS-----KKKKRLDKYIENKLKKEEVASLIAKLAEERIDTSLLSSS 125

Query: 576 KEM 584
           K +
Sbjct: 126 KNL 128


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/58 (27%), Positives = 22/58 (37%)
 Frame = -3

Query: 429  PDAASSARLPPRWTGARCRSGSSLSPSQPFRQLESIDLSSKTWVSNPVARVLQESCTV 256
            P  AS  R+PP    +     + ++P  P      I  S     SNP   +   S TV
Sbjct: 937  PPTASGTRVPPVQQPSHPNPYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASSTV 994


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +3

Query: 387 LSTEEEDERLKQRPADIDADVREMER-----RKRVEALMSSKLFREELERVLD 530
           L  EE ++ L ++  D+D+  + ++      RK  EAL  SKL  + L  V+D
Sbjct: 668 LKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVID 720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,683
Number of Sequences: 5004
Number of extensions: 64141
Number of successful extensions: 215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)