Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P02
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   4.7  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   8.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.2  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   8.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 441 RRCRPDAASSARLPPRWTG---ARCRSGSSLSPSQPFRQL 331
           RR RP  AS+ ++         A C SGSSL+ S+  R L
Sbjct: 112 RRHRPVCASNGKIYANHCELHRAACHSGSSLTKSRLMRCL 151


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 477 EALMSSKLFREELERVLDQQMHEGGD 554
           E L  +K+ +EE+  +LD+ +    D
Sbjct: 438 EVLKEAKIIQEEIRTLLDESIQRKSD 463


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 477 EALMSSKLFREELERVLDQQMHEGGD 554
           E L  +K+ +EE+  +LD+ +    D
Sbjct: 144 EVLKEAKIIQEEIRTLLDESIQRKSD 169


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +2

Query: 383 APVHRGGRRALEAASGRHRRRCPRNGTPEARRSSHVLEAVPR 508
           AP    GRR    A    R  CP+    E R+   VL  + R
Sbjct: 59  APCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQR 100


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 165 ARNIIFVKTRTYCSLY 118
           AR +  V+  TYC+L+
Sbjct: 529 ARRVASVRAETYCNLF 544


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 165 ARNIIFVKTRTYCSLY 118
           AR +  V+  TYC+L+
Sbjct: 497 ARRVASVRAETYCNLF 512


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +2

Query: 383 APVHRGGRRALEAASGRHRRRCPRNGTPEARRSSHVLEAVPR 508
           AP    GRR    A    R  CP+    E R+   VL  + R
Sbjct: 59  APCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQR 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,722
Number of Sequences: 438
Number of extensions: 4940
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)