Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P01
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0073 - 25602268-25603182,25603273-25604190                       29   4.5  
07_01_0245 - 1803170-1803887,1803971-1804641                           29   6.0  
12_02_0905 - 24188563-24189189,24189648-24190577                       28   7.9  
12_01_0730 + 6505759-6508806                                           28   7.9  

>02_05_0073 - 25602268-25603182,25603273-25604190
          Length = 610

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 257 P*LLQRKPTVPRGQQRAGQGSQDPQQNPGA 346
           P + +R  T PRG  R G G  +PQ++ G+
Sbjct: 466 PGVHKRHATAPRGDIRGGGGETEPQESAGS 495


>07_01_0245 - 1803170-1803887,1803971-1804641
          Length = 462

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 286 YCRFTL*QLRKPEYSPPLTILPSPQ*STCSISSPVKGSLSSLY 158
           YC+  L +L       PL + PSP+ S     +P  G+L++ +
Sbjct: 39  YCKIRLNKLPYQTADAPLLLPPSPEASAAPAPAPATGALAAAF 81


>12_02_0905 - 24188563-24189189,24189648-24190577
          Length = 518

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 341 RDSVGDLAILVRPVADLLVLSVYVVAVTEARIQSPVDDTSLTPVVD 204
           RD+ G   + +RP    LVL+V + A T  R  + VD   L  +++
Sbjct: 171 RDAAGGAKVTLRPRLFELVLNVMLRAATTRRRHASVDARKLQEIIE 216


>12_01_0730 + 6505759-6508806
          Length = 1015

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -2

Query: 250 EYSPPLTILPSPQ*STCSISSPVKGSLSSLYCAMYGSSEYXILQVHVGQVVGALGRLPVV 71
           +Y+P L +L  P    CS+S P+  S SSL         Y  L   V + +     L V+
Sbjct: 239 KYTPKLQVLSLPY---CSLSGPICASFSSLQALTMIELHYNRLSGSVPEFLAGFSNLTVL 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,523,411
Number of Sequences: 37544
Number of extensions: 450756
Number of successful extensions: 1381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)