Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_P01
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   8.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 238 PLTILPSPQ*STCSISSPVKGSLSS 164
           P+  +P PQ +  +I SPV+  LSS
Sbjct: 792 PVYCVPVPQVNDSTILSPVREKLSS 816


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 272  RKPTVPRGQQRAGQGSQDPQQNPGARRERLR 364
            R    PR   RA  G  D +Q P  R + +R
Sbjct: 908  RSNVTPRSPGRAWPGDSDIRQRPIPRSDDIR 938


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 339 PVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSA-RDITRIVN 464
           P+R  +DC T + +  D   +V L       +S  R +  IV+
Sbjct: 419 PIRKISDCSTTSSLSGDESDVVELQPVKSSKSSGWRKLRNIVH 461


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 172 LSSLYCAMYGSSEYXILQVHVGQVVGALGRLPVVVWIHLVSSC 44
           L   Y  M+G  +  ++ VH    +   G +  ++  HL+ SC
Sbjct: 144 LPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSC 186


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 172 LSSLYCAMYGSSEYXILQVHVGQVVGALGRLPVVVWIHLVSSC 44
           L   Y  M+G  +  ++ VH    +   G +  ++  HL+ SC
Sbjct: 144 LPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSC 186


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 172 LSSLYCAMYGSSEYXILQVHVGQVVGALGRLPVVVWIHLVSSC 44
           L   Y  M+G  +  ++ VH    +   G +  ++  HL+ SC
Sbjct: 195 LPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSC 237


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 172 LSSLYCAMYGSSEYXILQVHVGQVVGALGRLPVVVWIHLVSSC 44
           L   Y  M+G  +  ++ VH    +   G +  ++  HL+ SC
Sbjct: 144 LPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSC 186


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 571 YELPDYLQEPTMMDSHVAFLNKQLLMDLLFKYVSTGXLRQ 690
           +  P +L +PT++  HV  L+   + +    YV+   L Q
Sbjct: 20  HRAPKFLGQPTIVYFHVTVLSIDSINEESMTYVADIFLAQ 59


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 588 LTGTDNDGLARGFPQQATSY 647
           LT  D DG  +GFP + + Y
Sbjct: 17  LTTQDVDGFLQGFPGKNSPY 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,095
Number of Sequences: 438
Number of extensions: 4770
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)