Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_O24
(895 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein. 52 4e-06
DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase p... 50 2e-05
AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein. 50 2e-05
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 50 2e-05
AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein pro... 50 2e-05
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 50 2e-05
AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein pro... 50 2e-05
AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein. 50 2e-05
AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein. 50 2e-05
AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein. 50 2e-05
AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein. 50 2e-05
AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein. 50 2e-05
AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein. 50 2e-05
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 49 2e-05
AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein. 49 2e-05
AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein. 48 6e-05
AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein pro... 45 3e-04
U87593-1|AAB63116.1| 201|Homo sapiens polymerase protein. 33 1.1
U87592-1|AAB63115.1| 201|Homo sapiens polymerase protein. 33 1.1
AL353662-6|CAI15919.1| 1234|Homo sapiens chromosome 9 open readi... 33 1.1
U87590-1|AAB63113.1| 198|Homo sapiens polymerase protein. 33 1.8
BC069141-1|AAH69141.1| 125|Homo sapiens lymphocyte antigen 6 co... 33 1.8
AJ245419-1|CAB52193.1| 125|Homo sapiens G6e protein protein. 33 1.8
U87591-1|AAB63114.1| 198|Homo sapiens polymerase protein. 32 2.4
AK127568-1|BAC87038.1| 215|Homo sapiens protein ( Homo sapiens ... 32 3.2
U87595-1|AAB63117.1| 197|Homo sapiens polymerase protein. 31 7.5
AJ233632-1|CAA13576.1| 109|Homo sapiens reverse transcriptase p... 30 9.9
AF016000-1|AAB71676.1| 81|Homo sapiens reverse transcriptase p... 30 9.9
>DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein.
Length = 135
Score = 51.6 bits (118), Expect = 4e-06
Identities = 32/95 (33%), Positives = 47/95 (49%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL +
Sbjct: 41 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSLA 99
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 100 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 134
>DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase
protein.
Length = 573
Score = 49.6 bits (113), Expect = 2e-05
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 52 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPA 110
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 111 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 145
>AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 49.6 bits (113), Expect = 2e-05
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 52 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPA 110
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 111 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 145
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 49.6 bits (113), Expect = 2e-05
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 52 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPA 110
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 111 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 145
>AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1117
Score = 49.6 bits (113), Expect = 2e-05
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 975 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPA 1033
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 1034 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 1068
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1879
Score = 49.6 bits (113), Expect = 2e-05
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 975 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPA 1033
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 1034 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 1068
>AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1177
Score = 49.6 bits (113), Expect = 2e-05
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 975 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPA 1033
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 1034 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 1068
>AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 49.6 bits (113), Expect = 2e-05
Identities = 32/92 (34%), Positives = 46/92 (50%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 35 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPA 93
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAF 610
+ TID+ F IP++E EK AF
Sbjct: 94 MIPKDWPLITIDLKDCFFTIPLAEQDCEKFAF 125
>AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 49.6 bits (113), Expect = 2e-05
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 35 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPA 93
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 94 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 128
>AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 49.6 bits (113), Expect = 2e-05
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 35 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPA 93
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 94 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 128
>AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein.
Length = 597
Score = 49.6 bits (113), Expect = 2e-05
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 51 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPA 109
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 110 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 144
>AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 49.6 bits (113), Expect = 2e-05
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 52 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPA 110
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 111 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 145
>AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 49.6 bits (113), Expect = 2e-05
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 52 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPA 110
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 111 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 145
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 49.2 bits (112), Expect = 2e-05
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 975 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-LIQPMGPLQPGLPSPA 1033
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 1034 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 1068
>AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein.
Length = 596
Score = 49.2 bits (112), Expect = 2e-05
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK RM D R +N ++ PL
Sbjct: 51 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-LIQPMGPLQPGLPSPA 109
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 110 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 144
>AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein.
Length = 863
Score = 47.6 bits (108), Expect = 6e-05
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 12/145 (8%)
Frame = +2
Query: 260 LKDESKTVERRPYRLSPVERGKVRDIVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMC 439
L ++ K + + P L+ + V DIV + LE ++ S SP+ +P+ ++KKK+GK ++
Sbjct: 21 LDNKPKWIPQWP--LTQEKLAAVNDIVLQQLEAGHLQPSTSPWNTPVFVIKKKSGKYQLL 78
Query: 440 VDYRELNR-----NTVRDHYPLPIISDQIDQLAGGIYFTTIDMAAGFHQIPISEGSIEKT 604
D R +N+ ++ P+P + + L +D+ F IP+ E I++
Sbjct: 79 HDLRAVNQQMQPMGALQPGLPVPTMIPKHWPL------IVLDLKDCFFSIPLHEQDIQRF 132
Query: 605 AFVT-------PDGLYEYLTMPFGL 658
AF PD YE+ +P G+
Sbjct: 133 AFTVPSINHQGPDKRYEWKVLPQGM 157
>AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1755
Score = 45.2 bits (102), Expect = 3e-04
Identities = 30/95 (31%), Positives = 44/95 (46%)
Frame = +2
Query: 335 IVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQID 514
+ NE LE I S SP+ SP+ +++KK+GK D R +N ++ PL
Sbjct: 975 LANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWHTLTDLRAVNA-VIQPMGPLQPGLPSPA 1033
Query: 515 QLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTP 619
+ ID+ F IP++E EK AF P
Sbjct: 1034 MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 1068
>U87593-1|AAB63116.1| 201|Homo sapiens polymerase protein.
Length = 201
Score = 33.5 bits (73), Expect = 1.1
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 404 IVKKKNGKDRMCVDYRELN--RNTVRDHYPLPIISDQIDQLAGGIYFTTIDMAAGFHQIP 577
+++KK+GK RM D R +N ++ PL + + ID+ F IP
Sbjct: 1 VIQKKSGKWRMLTDLRAVNAVNAVIQPMGPLQPGLPSLAMIPKDWPLIIIDLKDCFFTIP 60
Query: 578 ISEGSIEKTAFVTP 619
++E EK AF P
Sbjct: 61 LAEQDCEKFAFTIP 74
>U87592-1|AAB63115.1| 201|Homo sapiens polymerase protein.
Length = 201
Score = 33.5 bits (73), Expect = 1.1
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 404 IVKKKNGKDRMCVDYRELN--RNTVRDHYPLPIISDQIDQLAGGIYFTTIDMAAGFHQIP 577
+++KK+GK RM D R +N ++ PL + + ID+ F IP
Sbjct: 1 VIQKKSGKWRMLTDLRAVNAVNAVIQPMGPLQPGLPSLAMIPKDWPLIIIDLKDCFFTIP 60
Query: 578 ISEGSIEKTAFVTP 619
++E EK AF P
Sbjct: 61 LAEQDCEKFAFTIP 74
>AL353662-6|CAI15919.1| 1234|Homo sapiens chromosome 9 open reading
frame 48 protein.
Length = 1234
Score = 33.5 bits (73), Expect = 1.1
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Frame = +2
Query: 182 LLNKFEHL--FIHGYPHT--RVNTGELEIRLKDESKT---VERRPYRLSPVERGKVRDIV 340
++ + H+ + +G PH+ R NT E + + K V +RP + V RG++ I
Sbjct: 188 IIQRISHVSGYNYGIPHSCIRQNTSEKQNPWTEMEKIRVCVRKRPLGMREVRRGEINIIT 247
Query: 341 NELLEHKIIRESKS--PFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPI-ISDQI 511
E E ++ E K I+ V K K+R +N ++ R H + I I D
Sbjct: 248 VEDKETLLVHEKKEAVDLTQYILQVILKGSKER-STGATGVNADSSRSHAVIQIQIKDSA 306
Query: 512 DQLAGGIYFTTIDMA 556
+ G I F ID+A
Sbjct: 307 KRTFGRISF--IDLA 319
>U87590-1|AAB63113.1| 198|Homo sapiens polymerase protein.
Length = 198
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +2
Query: 404 IVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQIDQLAGGIYFTTIDMAAGFHQIPIS 583
+++KK+GK RM D R +N ++ PL + ID+ F IP++
Sbjct: 1 VIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLA 59
Query: 584 EGSIEKTAFVTP 619
E EK AF P
Sbjct: 60 EQDCEKFAFTIP 71
>BC069141-1|AAH69141.1| 125|Homo sapiens lymphocyte antigen 6
complex, locus G6E protein.
Length = 125
Score = 32.7 bits (71), Expect = 1.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 610 CNSRWFI*IPNYAIWTLHAVSVYQRCINRALAHLTSSPDQV 732
C SR +P YA + LH+ +++ C + L ++ +SP Q+
Sbjct: 63 CLSRAQCPLPGYATYWLHSYTLWHHCCEQDLCNIAASPQQL 103
>AJ245419-1|CAB52193.1| 125|Homo sapiens G6e protein protein.
Length = 125
Score = 32.7 bits (71), Expect = 1.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 610 CNSRWFI*IPNYAIWTLHAVSVYQRCINRALAHLTSSPDQV 732
C SR +P YA + LH+ +++ C + L ++ +SP Q+
Sbjct: 63 CLSRAQCPLPGYATYWLHSYTLWHHCCEQDLCNIAASPQQL 103
>U87591-1|AAB63114.1| 198|Homo sapiens polymerase protein.
Length = 198
Score = 32.3 bits (70), Expect = 2.4
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +2
Query: 404 IVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQIDQLAGGIYFTTIDMAAGFHQIPIS 583
+++KK+GK RM D R +N ++ PL + ID+ F IP++
Sbjct: 1 VIQKKSGKWRMLTDLRAVNA-LIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLA 59
Query: 584 EGSIEKTAFVTP 619
E EK AF P
Sbjct: 60 EQDCEKFAFTIP 71
>AK127568-1|BAC87038.1| 215|Homo sapiens protein ( Homo sapiens
cDNA FLJ45661 fis, clone CTONG2026987. ).
Length = 215
Score = 31.9 bits (69), Expect = 3.2
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +2
Query: 326 VRDIVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYR 451
++ ++ LL+H +++ SP+ SPI+ V+K + R+ D R
Sbjct: 32 LKPVITCLLQHGLLKPINSPYNSPILPVQKLDKSHRLVQDLR 73
>U87595-1|AAB63117.1| 197|Homo sapiens polymerase protein.
Length = 197
Score = 30.7 bits (66), Expect = 7.5
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +2
Query: 404 IVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQIDQLAGGIYFTTIDMAAGFHQIPIS 583
+++KK+G+ RM D R +N ++ PL + ID+ F IP++
Sbjct: 1 VIQKKSGRWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPEDWPLIIIDLKYCFFTIPLA 59
Query: 584 EGSIEKTAFVTP 619
+ EK AF P
Sbjct: 60 KQDFEKLAFTIP 71
>AJ233632-1|CAA13576.1| 109|Homo sapiens reverse transcriptase
protein.
Length = 109
Score = 30.3 bits (65), Expect = 9.9
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 431 RMCVDYRELNRNTVRDHYPLPIISDQIDQL--AGGIYFTTIDMAAGFHQIPISEGSIEKT 604
RM VDYR+LN+ + + + ++Q+ + ++ D+A F IP+ + ++
Sbjct: 1 RMIVDYRKLNKGSTPTAAAVSDVVSLLEQINTSPDTWYVATDLANAFCSIPVHKAHQKQF 60
Query: 605 AF 610
AF
Sbjct: 61 AF 62
>AF016000-1|AAB71676.1| 81|Homo sapiens reverse transcriptase
protein.
Length = 81
Score = 30.3 bits (65), Expect = 9.9
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +2
Query: 407 VKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQIDQLAGGIYFTTIDMAAGFHQIPISE 586
V+KK+GK R D R +N ++ L + ID+ F IP+ +
Sbjct: 1 VQKKSGKWRTVTDLRAVN-TVIKPMGALQPSMPSPSVIPEAWPLIIIDLKDCFFHIPLDK 59
Query: 587 GSIEKTAFVTP 619
EK AF TP
Sbjct: 60 SDCEKFAFTTP 70
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,439,950
Number of Sequences: 237096
Number of extensions: 2488741
Number of successful extensions: 8902
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 8577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8885
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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