Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_O24
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      27   0.31 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.71 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.71 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.71 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    25   1.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   8.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   8.7  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   8.7  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 367 NYFMLKQFVNDIANFSPFNWTKPIGP 290
           N + L++  ND+ +   F+W KP  P
Sbjct: 268 NRYYLERLSNDLPHLEEFDWQKPFYP 293


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 361 FMLKQFVNDIANFSPFNWTKPI 296
           + L++  ND+   + F+W KPI
Sbjct: 272 YFLERMSNDLGKTAEFDWNKPI 293


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 367 NYFMLKQFVNDIANFSPFNWTKPIGP 290
           N + L++  ND+     F+W KP  P
Sbjct: 268 NRYYLERLSNDLPYLEEFDWQKPFYP 293


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 361 FMLKQFVNDIANFSPFNWTKPI 296
           + L++  ND+   + F+W KPI
Sbjct: 272 YFLERMSNDLGKTAEFDWNKPI 293


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 92  IIYHMRSQSPKFGKLDCDLTNDNQISELKIL 184
           ++  ++S+  K   L CDL+N N I  LK++
Sbjct: 47  LVEELKSKPGKLVPLQCDLSNQNDI--LKVI 75


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 414 FLTIIIGLAKGDLLSRIILCSSNSLTISRTF 322
           FLT+++     D   ++ LCSS  L+++  F
Sbjct: 265 FLTVLVFYLPSDSGEKVSLCSSILLSLTVFF 295


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 20/84 (23%), Positives = 34/84 (40%)
 Frame = +2

Query: 47  SVVVNSRGAMLVHQPIIYHMRSQSPKFGKLDCDLTNDNQISELKILLNKFEHLFIHGYPH 226
           + ++ +R   L H+P  YH+   S K  K    +    +  E        E   +H Y +
Sbjct: 483 NTMIKARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYDEF-----GHEVDLVHNYMN 537

Query: 227 TRVNTGELEIRLKDESKTVERRPY 298
             +   E  + LK  S T+ER  +
Sbjct: 538 F-MQMDEFVVNLKSGSNTIERNSH 560


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 20/84 (23%), Positives = 34/84 (40%)
 Frame = +2

Query: 47  SVVVNSRGAMLVHQPIIYHMRSQSPKFGKLDCDLTNDNQISELKILLNKFEHLFIHGYPH 226
           + ++ +R   L H+P  YH+   S K  K    +    +  E        E   +H Y +
Sbjct: 483 NTMIKARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYDEF-----GHEVDLVHNYMN 537

Query: 227 TRVNTGELEIRLKDESKTVERRPY 298
             +   E  + LK  S T+ER  +
Sbjct: 538 F-MQMDEFVVNLKSGSNTIERNSH 560


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 20/84 (23%), Positives = 34/84 (40%)
 Frame = +2

Query: 47  SVVVNSRGAMLVHQPIIYHMRSQSPKFGKLDCDLTNDNQISELKILLNKFEHLFIHGYPH 226
           + ++ +R   L H+P  YH+   S K  K    +    +  E        E   +H Y +
Sbjct: 109 NTMIKARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYDEF-----GHEVDLVHNYMN 163

Query: 227 TRVNTGELEIRLKDESKTVERRPY 298
             +   E  + LK  S T+ER  +
Sbjct: 164 F-MQMDEFVVNLKSGSNTIERNSH 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,512
Number of Sequences: 438
Number of extensions: 5004
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)