Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_O23
(978 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 202 6e-53
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 82 1e-16
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 55 2e-08
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 51 2e-07
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 38 0.002
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 32 0.11
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 29 1.3
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 28 1.7
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.0
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 27 3.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 4.0
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 4.0
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 7.0
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 202 bits (493), Expect = 6e-53
Identities = 96/129 (74%), Positives = 114/129 (88%)
Frame = +3
Query: 267 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 446
E DLY ++K L+R LE L++QE +IK++ ++LK+E + AQEEVKRIQSVPLVIGQFLEA
Sbjct: 5 EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64
Query: 447 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 626
+DQNT IVGSTTGSNY VRILST+DRELLKPSASVAL +HSNALVD+LPPEADSSISML+
Sbjct: 65 IDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLR 124
Query: 627 ADEKPDVQY 653
DE+PDV Y
Sbjct: 125 PDERPDVSY 133
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 81.8 bits (193), Expect = 1e-16
Identities = 42/122 (34%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Frame = +3
Query: 297 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV---PLVIGQFLEAVDQNTGI 467
K+QR+ + L ++EEY+++++R LK + QEE R+ + P+ +G E +D + I
Sbjct: 71 KMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAI 129
Query: 468 VGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDV 647
V ST G YYV I+S +D+++L+P SV LH + ++V +L + D I++++ D+ P
Sbjct: 130 V-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 648 QY 653
Y
Sbjct: 189 SY 190
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 54.8 bits (126), Expect = 2e-08
Identities = 30/129 (23%), Positives = 64/129 (49%)
Frame = +3
Query: 267 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 446
E + KYK + + + ++ R+L K+Y ++++K +QSV +IG+ L+
Sbjct: 3 ERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQ 62
Query: 447 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 626
+D IV +++G Y V + +D+ L V+L + ++ +LP E D + +
Sbjct: 63 LDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMS 122
Query: 627 ADEKPDVQY 653
++ D+ +
Sbjct: 123 IEDPGDISF 131
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 51.2 bits (117), Expect = 2e-07
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Frame = +3
Query: 348 DEQRN-LKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDR 524
+ QRN L +EE++ +Q +G+ ++ + +N +V Y V I ID
Sbjct: 42 EAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDI 101
Query: 525 ELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYRI 659
+ +KP+ VAL S L+ +LP + D +S++ ++ PD Y +
Sbjct: 102 KEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEM 146
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/71 (23%), Positives = 37/71 (52%)
Frame = +3
Query: 441 EAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISM 620
++ ++N ++ + + V + + ++ V ++ A+ LPP+ D S++M
Sbjct: 108 QSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTM 167
Query: 621 LQADEKPDVQY 653
+Q +EKPDV Y
Sbjct: 168 MQVEEKPDVTY 178
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 32.3 bits (70), Expect = 0.11
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 479 GAANYACILINCLK-KLSNDKRNRLYALYFFLCMQIFFLQVSLFIFNVLFLY 327
G Y C+++ + ++N +N+ A FF C+ + F Q++L+ +F Y
Sbjct: 182 GHFQYNCVMLGLVMYAIANLLKNQYVAATFFFCLALTFKQMALYFAPPIFFY 233
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 28.7 bits (61), Expect = 1.3
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 249 QSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKD--EQRNLKKEYLHAQEEVKRI 407
QSF E E E TK+K L R LE E +K E +E L ++E RI
Sbjct: 36 QSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAESSQHAEEILSREKEKFRI 90
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -2
Query: 410 LYALYFFLCMQIFFLQVSLFIFNVLFL 330
+++L+FFLCM+ FF +++ F LFL
Sbjct: 360 IFSLFFFLCMRNFFPGFTIY-FPALFL 385
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 534 KPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 653
KPS++V+ S+A DV+ + S+I+ D K DV +
Sbjct: 244 KPSSNVSRGTPSSAHSDVIEISSSSAIARTSGDRKDDVLF 283
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 400 FTSSCACKYSFFKFRCSSLMYSSCTSKNSNILW 302
F C S +F C ++ TSK N+LW
Sbjct: 313 FPEPSFCSASKIRFNCDETYAATITSKYPNVLW 345
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 4.0
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 198 EKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 377
EK+ + K L A + E+E L + Q+ LE +E K E++ LK+E
Sbjct: 593 EKEKKRDKKKQLKLAKEEERQRREAERLAEQ--AAQKALEAKRQEEARKKREEQRLKREQ 650
Query: 378 LHAQEEVKR 404
Q+E++R
Sbjct: 651 EKKQQELER 659
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 4.0
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 3/154 (1%)
Frame = +3
Query: 192 LPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKK 371
L +K + +TD+ +S +E S+++ TK + + + +K E+ L +
Sbjct: 317 LQDKLELLTDAYNREKRRARSLEERMSKEMLTKLGESNVDDGMAASRYDTVKREKERLSE 376
Query: 372 EYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASV 551
QE+ + IQSV + +D+ + I+ + +L+ + +LK
Sbjct: 377 HLKSLQEQYEHIQSVYKNV-----LLDRESYIMRLGNKISENNELLN--ENRVLKEKLQT 429
Query: 552 ALHKHSNALVDVLPPEADSS---ISMLQADEKPD 644
L K + + + A++S +SM +ADE+ D
Sbjct: 430 YLDKKESNVTSKIKSTAENSSKPLSMNEADERKD 463
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 366 KKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 467
K ++ A E+ + VPL +F + VDQN G+
Sbjct: 51 KSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIGV 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,683
Number of Sequences: 5004
Number of extensions: 52923
Number of successful extensions: 171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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