Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_O22
         (897 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M86737-1|AAA58660.1|  709|Homo sapiens high mobility group box p...   157   7e-38
BC091486-1|AAH91486.1|  633|Homo sapiens SSRP1 protein protein.       157   7e-38
BC005116-1|AAH05116.1|  709|Homo sapiens structure specific reco...   157   7e-38
AB209132-1|BAD92369.1|  547|Homo sapiens structure specific reco...   110   6e-24

>M86737-1|AAA58660.1|  709|Homo sapiens high mobility group box
           protein.
          Length = 709

 Score =  157 bits (380), Expect = 7e-38
 Identities = 84/202 (41%), Positives = 119/202 (58%), Gaps = 1/202 (0%)
 Frame = +2

Query: 239 QK*KETWYQGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTL 418
           Q+ K +   GRL+++ Q IIFKNSKTGKV+ I A ++    +++     GL+L  KNG +
Sbjct: 12  QEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHV 71

Query: 419 HRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEI 598
           ++Y GF+E E EK++ FFK +Y  +++EK+L +KGWNWGT KF G +LSF++G    FEI
Sbjct: 72  YKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEI 131

Query: 599 PLHYVSQCNTGKNEVHSNFIRMMTHLYH*WKCASTFPPXEVANDLDAVEXXXQQV*TKR- 775
           PL  VSQC TGKNEV   F +         +     PP +  + +D VE   Q V +K  
Sbjct: 132 PLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQ-EDGVDPVEAFAQNVLSKAD 190

Query: 776 VLFXXXVMXCXFXKTXXLTPXG 841
           V+       C F +   LTP G
Sbjct: 191 VIQATGDAICIFRELQCLTPRG 212


>BC091486-1|AAH91486.1|  633|Homo sapiens SSRP1 protein protein.
          Length = 633

 Score =  157 bits (380), Expect = 7e-38
 Identities = 84/202 (41%), Positives = 119/202 (58%), Gaps = 1/202 (0%)
 Frame = +2

Query: 239 QK*KETWYQGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTL 418
           Q+ K +   GRL+++ Q IIFKNSKTGKV+ I A ++    +++     GL+L  KNG +
Sbjct: 12  QEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHV 71

Query: 419 HRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEI 598
           ++Y GF+E E EK++ FFK +Y  +++EK+L +KGWNWGT KF G +LSF++G    FEI
Sbjct: 72  YKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEI 131

Query: 599 PLHYVSQCNTGKNEVHSNFIRMMTHLYH*WKCASTFPPXEVANDLDAVEXXXQQV*TKR- 775
           PL  VSQC TGKNEV   F +         +     PP +  + +D VE   Q V +K  
Sbjct: 132 PLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQ-EDGVDPVEAFAQNVLSKAD 190

Query: 776 VLFXXXVMXCXFXKTXXLTPXG 841
           V+       C F +   LTP G
Sbjct: 191 VIQATGDAICIFRELQCLTPRG 212


>BC005116-1|AAH05116.1|  709|Homo sapiens structure specific
           recognition protein 1 protein.
          Length = 709

 Score =  157 bits (380), Expect = 7e-38
 Identities = 84/202 (41%), Positives = 119/202 (58%), Gaps = 1/202 (0%)
 Frame = +2

Query: 239 QK*KETWYQGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTL 418
           Q+ K +   GRL+++ Q IIFKNSKTGKV+ I A ++    +++     GL+L  KNG +
Sbjct: 12  QEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHV 71

Query: 419 HRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEI 598
           ++Y GF+E E EK++ FFK +Y  +++EK+L +KGWNWGT KF G +LSF++G    FEI
Sbjct: 72  YKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEI 131

Query: 599 PLHYVSQCNTGKNEVHSNFIRMMTHLYH*WKCASTFPPXEVANDLDAVEXXXQQV*TKR- 775
           PL  VSQC TGKNEV   F +         +     PP +  + +D VE   Q V +K  
Sbjct: 132 PLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQ-EDGVDPVEAFAQNVLSKAD 190

Query: 776 VLFXXXVMXCXFXKTXXLTPXG 841
           V+       C F +   LTP G
Sbjct: 191 VIQATGDAICIFRELQCLTPRG 212


>AB209132-1|BAD92369.1|  547|Homo sapiens structure specific
           recognition protein 1 variant protein.
          Length = 547

 Score =  110 bits (265), Expect = 6e-24
 Identities = 49/105 (46%), Positives = 73/105 (69%)
 Frame = +2

Query: 239 QK*KETWYQGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTL 418
           Q+ K +   GRL+++ Q IIFKNSKTGKV+ I A ++    +++     GL+L  KNG +
Sbjct: 216 QEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHV 275

Query: 419 HRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNG 553
           ++Y GF+E E EK++ FFK +Y  +++EK+L +KGWNWGT KF G
Sbjct: 276 YKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGG 320



 Score = 48.4 bits (110), Expect = 3e-05
 Identities = 22/42 (52%), Positives = 26/42 (61%)
 Frame = +2

Query: 530 WGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVHSNF 655
           W +    G +LSF++G    FEIPL  VSQC TGKNEV   F
Sbjct: 408 WISPFLTGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEF 449



 Score = 40.7 bits (91), Expect = 0.007
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +1

Query: 646 LEFHQNDDTPVSLMEMRFHIP 708
           LEFHQNDD  VSLME+RF++P
Sbjct: 447 LEFHQNDDAEVSLMEVRFYVP 467


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,322,234
Number of Sequences: 237096
Number of extensions: 2207823
Number of successful extensions: 7215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7212
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)