Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_O19
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc... 28 1.4
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 28 1.9
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 28 1.9
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 27 3.3
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 27 4.3
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S... 26 7.5
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 26 7.5
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.5
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 10.0
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 10.0
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 25 10.0
>SPBC146.10 |mug57||meiotically upregulated gene
Mug57|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 284 MSGSSLQIVSVELENVINRTSKCLRRGIKHLGELWVLTQALKTIPPMR 427
+ G+ + ++ E E IN + L R GE+WVL L T P +R
Sbjct: 142 IDGTDVHVIKKEEEIYINESIHVLCRKKASNGEMWVLNATLST-PSIR 188
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 239 EMNKLWQMTMMTKMRMS--GSSLQIVSVELENVINRTSKCLRRGIKH-LGELWVLTQALK 409
EMN+LW T K+++ G + + + V NR C ++ G ++V QA+
Sbjct: 81 EMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVL 140
Query: 410 TI 415
++
Sbjct: 141 SL 142
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 394 DTSTEDHSTNEDTNQSTEKPYLVQKTNDYLQSLRR 498
+ S E + ED + + EKP ++ +TN L +LR+
Sbjct: 380 EDSEETSESEEDESVNDEKPQVIDQTNASLVNLRK 414
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 334 KSDLEMFTTRDKALRRTMGIDTSTEDHSTNEDTNQSTEK 450
K D ++ +K+ + +DT +++ +EDT Q++EK
Sbjct: 44 KEDEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEK 82
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 229 NKSGDEQVVANDNDDKDENEWVE 297
NK D V+ D+DD+DE+E +E
Sbjct: 255 NKFADLSVLEEDDDDEDEDEELE 277
>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 445
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/73 (21%), Positives = 32/73 (43%)
Frame = +2
Query: 251 LWQMTMMTKMRMSGSSLQIVSVELENVINRTSKCLRRGIKHLGELWVLTQALKTIPPMRI 430
LW + ++ + +SG+S E ++ + + +L ++ LKT PP R
Sbjct: 353 LWSLGVIMFLLLSGNSPSFADGVKEKQVDFRDPVWKSVSRQAKDL--ISNLLKTNPPDRF 410
Query: 431 QISQQRNRIWYRR 469
+ Q + W+ R
Sbjct: 411 TVKQCLSHPWFAR 423
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 349 MFTTRDKALRRTMGIDTSTEDHSTNEDTNQSTEKPYLVQKTNDYL 483
+FTT DK L R+ S + + N KP++ + N+ +
Sbjct: 15 LFTTADKKLMRSTKFPASYDTKVDMKKVNIEVLKPWIATRLNELI 59
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 7.5
Identities = 33/128 (25%), Positives = 46/128 (35%), Gaps = 1/128 (0%)
Frame = +1
Query: 268 DDKDENEWVEFTDCLGRTRKCHKSDLEMFTTRDKALRRTMGIDTSTEDHSTNEDTNQSTE 447
++ ENE VE TD GRTR + ++ T + L ++ E
Sbjct: 141 EEAPENETVEITDEFGRTR-----SVSIYETGNTLL---------------SQKEEYKPE 180
Query: 448 KPYLVQKTNDYLQSLR-RXXXXXXXXXXXXXXXIHYQDLLFDEARIHGVGYYSFSTDETE 624
KP DY+ S +HY E R G +Y FS DE E
Sbjct: 181 KPIY----GDYMPSFEVDEEKVQKLWKEDEQQAVHYDST--KEVRNKGTAFYQFSFDEKE 234
Query: 625 RRKQMEEL 648
R +Q+ L
Sbjct: 235 REEQLLSL 242
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/80 (17%), Positives = 39/80 (48%)
Frame = +1
Query: 259 NDNDDKDENEWVEFTDCLGRTRKCHKSDLEMFTTRDKALRRTMGIDTSTEDHSTNEDTNQ 438
++ ++++E E E + SDLE + D+++ + + + + ++ED ++
Sbjct: 198 DEGEEEEEREEAELEFVSDDEDEEEISDLEDWLGSDQSMETSESEEEESSESESDEDEDE 257
Query: 439 STEKPYLVQKTNDYLQSLRR 498
+ +KT+D +S ++
Sbjct: 258 DNKGKIRKRKTDDAKKSRKK 277
>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 274 KDENEWVEFTDCLGRTRKCHKSDLEMFTTRDKALRRTMGIDTS 402
K + W +F L R +C K LE+F D R + + TS
Sbjct: 204 KKKMPWSKFNSVLSRYIQCTKLQLEVFCDYDFKQREIVKMLTS 246
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 741 RGDPGSHQLVTLFPXFLS 688
R DPG HQL+ F FLS
Sbjct: 224 RDDPGLHQLLPYFIMFLS 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,716
Number of Sequences: 5004
Number of extensions: 50309
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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