Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_O18
(898 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 222 6e-59
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 222 6e-59
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 157 2e-39
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 90 5e-19
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 78 1e-15
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 74 3e-14
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 73 7e-14
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 42 2e-04
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.024
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.024
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.032
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 29 0.68
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 28 1.6
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 28 2.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 2.1
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 28 2.1
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 26 8.4
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 222 bits (542), Expect = 6e-59
Identities = 112/191 (58%), Positives = 139/191 (72%), Gaps = 1/191 (0%)
Frame = +3
Query: 141 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRLTDTRKDEQDR 320
+E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ R DTR DEQ+R
Sbjct: 7 EEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQER 66
Query: 321 CITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRV 497
+TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRV
Sbjct: 67 GVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRV 121
Query: 498 TDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRI 677
TDGAL QTETVLRQA+ ERI+P++ +NK+DR YQ F R+
Sbjct: 122 TDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARV 181
Query: 678 VENVNVIIATY 710
VE+VNV+I+TY
Sbjct: 182 VESVNVVISTY 192
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 222 bits (542), Expect = 6e-59
Identities = 112/191 (58%), Positives = 139/191 (72%), Gaps = 1/191 (0%)
Frame = +3
Query: 141 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRLTDTRKDEQDR 320
+E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ R DTR DEQ+R
Sbjct: 7 EEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQER 66
Query: 321 CITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRV 497
+TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRV
Sbjct: 67 GVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRV 121
Query: 498 TDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRI 677
TDGAL QTETVLRQA+ ERI+P++ +NK+DR YQ F R+
Sbjct: 122 TDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARV 181
Query: 678 VENVNVIIATY 710
VE+VNV+I+TY
Sbjct: 182 VESVNVVISTY 192
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 157 bits (382), Expect = 2e-39
Identities = 87/190 (45%), Positives = 119/190 (62%)
Frame = +3
Query: 141 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRLTDTRKDEQDR 320
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG R D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Query: 321 CITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVT 500
IT+KS+AIS+FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+
Sbjct: 67 GITMKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLC 118
Query: 501 DGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIV 680
DGA QT TVLRQA +RIK IL +NKMDR + R+V
Sbjct: 119 DGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHLLRLV 178
Query: 681 ENVNVIIATY 710
E VN +I T+
Sbjct: 179 EQVNAVIGTF 188
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 89.8 bits (213), Expect = 5e-19
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 7/160 (4%)
Frame = +3
Query: 162 DKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA--GETRL---TDTRKDEQDR 320
DKKR IRN+ + AH+D GK+T T+ ++ G I G+ + D + E+++
Sbjct: 52 DKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREK 111
Query: 321 CITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVT 500
ITI+S A +E + N Q+ EK + IN+ID+PGH+DF+ EV ALRV
Sbjct: 112 GITIQSAATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVL 169
Query: 501 DGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 620
DGA+ QT TV RQ + I F+NKMDR
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDR 209
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 78.2 bits (184), Expect = 1e-15
Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Frame = +3
Query: 174 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA---GARAGETRLTDTRKDEQDRCITIKSTA 344
+IRN+ +IAH+D GK+TLT+ ++ G + G+T + D E+ R ITI S A
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDT-VMDYLPAERQRGITINSAA 85
Query: 345 ISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 524
IS + +QR INLID+PGH DF+ EV ++ V DGA+
Sbjct: 86 ISFTWR------------NQR--------INLIDTPGHADFTFEVERSVAVLDGAVAIID 125
Query: 525 XXXXXXXQTETVLRQAIAERIKPILFMNKMDR 620
QT+ V +QA I ++F+NKMDR
Sbjct: 126 GSAGVEAQTKVVWKQATKRGIPKVIFVNKMDR 157
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 73.7 bits (173), Expect = 3e-14
Identities = 51/174 (29%), Positives = 81/174 (46%)
Frame = +3
Query: 147 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRLTDTRKDEQDRCI 326
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I + D + E+ R I
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGI 106
Query: 327 TIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 506
T+K+ SM + + +L+NLID+PGHVDF +EV +L +G
Sbjct: 107 TVKAQTCSMIYYYH----------------GQSYLLNLIDTPGHVDFRAEVMHSLAACEG 150
Query: 507 ALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTF 668
+ QT + A ++ + I +NK+D QTF
Sbjct: 151 CILLVDASQGIQAQTLSNFYMAFSQNLVIIPVLNKVDLPTADVDRTLIQVQQTF 204
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 72.5 bits (170), Expect = 7e-14
Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 1/181 (0%)
Frame = +3
Query: 153 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRLTDTRKDEQDRCIT 329
G++ ++R+ V H+ HGKS L D LV + R TDT E++R ++
Sbjct: 132 GLLTGTDDVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMS 191
Query: 330 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 509
IKST +++ D + K+ F ID+PGHVDF EV A + ++DG
Sbjct: 192 IKSTPLTLAVS------------DMKGKT---FAFQCIDTPGHVDFVDEVAAPMAISDGV 236
Query: 510 LXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENV 689
+ T +++ AI + +L +NK+DR Y + +++ V
Sbjct: 237 VLVVDVIEGVMINTTRIIKHAILHDMPIVLVLNKVDRLILELRLPPNDAYHKLRHVIDEV 296
Query: 690 N 692
N
Sbjct: 297 N 297
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 41.5 bits (93), Expect = 2e-04
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 1/152 (0%)
Frame = +3
Query: 165 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRLTDTRKDEQDRCITIKSTA 344
KK ++ N+ I HVDHGK+TLT ++ + A + D +E+ R ITI S
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISSAH 108
Query: 345 ISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 524
+ +E + +D PGH D+ + DGA+
Sbjct: 109 VE--YETANRHYAH------------------VDCPGHADYIKNMITGAATMDGAIIVVS 148
Query: 525 XXXXXXXQTETVLRQAIAERIKPI-LFMNKMD 617
QT L A +K I +++NK+D
Sbjct: 149 ATDGQMPQTREHLLLARQVGVKQIVVYINKVD 180
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 34.3 bits (75), Expect = 0.024
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Frame = +3
Query: 159 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRLTDTRKDEQDRCITI 332
M K++ N+ VI HVD GKST T L+ K G I E T+ K +
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKG------SF 54
Query: 333 KSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 512
K + + E + + I + ++ K + + +ID+PGH DF + D A+
Sbjct: 55 KYAWVLDKLKAERERGITIDIALWKFETPK-YNVTVIDAPGHRDFIKNMITGTSQADCAI 113
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 34.3 bits (75), Expect = 0.024
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Frame = +3
Query: 159 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRLTDTRKDEQDRCITI 332
M K++ N+ VI HVD GKST T L+ K G I E T+ K +
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKG------SF 54
Query: 333 KSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 512
K + + E + + I + ++ K + + +ID+PGH DF + D A+
Sbjct: 55 KYAWVLDKLKAERERGITIDIALWKFETPK-YNVTVIDAPGHRDFIKNMITGTSQADCAI 113
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.032
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 159 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 254
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 29.5 bits (63), Expect = 0.68
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 186 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRLTDTRK---DEQDRCITIKSTAISMF 356
++++ HVDHGK+TL D+ K+ I + G T+ D+ + IT T M
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMA 232
Query: 357 FELEEK 374
FE K
Sbjct: 233 FEAMRK 238
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 28.3 bits (60), Expect = 1.6
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Frame = +3
Query: 183 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRLTDTRKDEQDRCITIKSTAISMFFE 362
N+ I HVD GKSTL +++ G++ R E + E + S A+ E
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV-DKRTMEK--IEREAKEAGKESWYLSWALDSTSE 296
Query: 363 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF-SSEVTAALRVTDGAL 512
EK E + F +L+D+PGH + ++ + A + G L
Sbjct: 297 EREKGKTVEVGRAYFETEHRRF--SLLDAPGHKGYVTNMINGASQADIGVL 345
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.9 bits (59), Expect = 2.1
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +3
Query: 141 DEIRGMMDKKR-NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRLTDTRKDEQD 317
DE M D+ R I + K+ +T L S+ ++A A R D + ++
Sbjct: 436 DEFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDMKTPGEN 495
Query: 318 RCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTA 485
I +ST +S F D++FI + E ++ ++I+ ++ SSE A
Sbjct: 496 --IDFQSTILSRF------DMIFIVKDEHDETKDRNIARHVINLHTNLQESSETLA 543
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 562 STVSVCTHTPDTQSTT-TRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 386
+T S + +P + STT T +PS + S++ +S S+ S S S S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 385 NTKSFSSSSKNIEMAV 338
++ S SSSS + + +
Sbjct: 195 SSSSSSSSSSSSSVPI 210
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -1
Query: 565 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 386
++TVS + + T S+++ +PS + + TS S+ S S S S
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 385 NTKSFSSSSKN 353
++ S SSSS +
Sbjct: 184 SSSSSSSSSSS 194
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 520 LTVCLVCVYKLKQYCVRLLPSASSLFCS*TKWTVLFLXSNLKLKN 654
L V + YKL+ RL +A S+ C WT LF SN+ +N
Sbjct: 348 LNVIGIAAYKLEDPVHRLFVTAFSVCCECLAWTSLF--SNISPEN 390
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 129 ISRXDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSL 239
IS I + ++ N+ I HV HGKST+ ++
Sbjct: 7 ISELSPIHPAIISRQATINIGTIGHVAHGKSTVVKAI 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,119
Number of Sequences: 5004
Number of extensions: 55057
Number of successful extensions: 170
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -