Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_O16
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 141 1e-34
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 29 1.2
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 28 2.1
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 27 2.7
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 27 3.6
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|... 27 4.8
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 27 4.8
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 6.3
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 26 8.3
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 26 8.3
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 141 bits (341), Expect = 1e-34
Identities = 66/168 (39%), Positives = 101/168 (60%)
Frame = +2
Query: 176 FQXLCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEICQTCSKLKN 355
F +C+ CLGDN Y+RMTKE G+ECKICS+P T+FRW + KT+IC C++ KN
Sbjct: 19 FPSICERCLGDNSYVRMTKEPLGQECKICSKPCTIFRWIKERGQKPGKTQICVGCARYKN 78
Query: 356 VCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKS 535
CQ+C+LDL++GLPI +RDAALK+ + P N++N+E++ QN + LSN + +S ++
Sbjct: 79 CCQSCMLDLQFGLPIALRDAALKLVESGPTNDINREFFAQNQQRLLSNGETAY--DSQEA 136
Query: 536 KGSSDLLVRLARTAPYYKRNRPHVCSFWGQRRMXTRGRMSVSSREANR 679
++ LV+ + R +++ R S +S A R
Sbjct: 137 SAAARNLVKKVEKRELHSRPPKRKLDDVESKQILKEARASDASLNAER 184
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 407 RDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLA 568
R+A K Q+DL +N NL+S+ ++ + L K +SD +R A
Sbjct: 153 RNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADESELSKKYTSDRKIRNA 206
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 2.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 585 IRGIDRTCARFGVKGECXRGEECPYRHEKPTD 680
++ + +F G C GE CP+ H T+
Sbjct: 39 VKNLQHVPCKFFRNGTCTAGENCPFSHSLETE 70
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 606 CARFGVKGECXRGEECPYRHEKPTDPD 686
C F +G C G +C Y H P D D
Sbjct: 117 CLYFA-RGMCSEGSKCEYLHRLPKDTD 142
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 606 CARFGVKGECXRGEECPYRHEKPT 677
C + +G C GEEC Y H P+
Sbjct: 82 CHFYAERGWCSNGEECLYLHLDPS 105
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 600 RTCARFGVKGECXRGEECPYRHEKPTDPDDP 692
R C ++ + G C G CP H K ++P P
Sbjct: 134 RPCPKY-LAGFCPLGPNCPDAHPKHSEPPHP 163
>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 50 ERSVLFDRLSCVESKIISRKD---TPWLHRS 133
+R+VLFDRLS V+ +++ PWL ++
Sbjct: 33 KRAVLFDRLSGVQKQVVQEGTHFLIPWLQKA 63
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 292 SRSKNAFQENRNMSDLFETEKCLSNMFIGFGIWSANPSE 408
S KN F +N +++ + LSN+ + I+S PSE
Sbjct: 92 SPKKNDFDDNMSLNSIVTMGSILSNVSSVWSIFSTAPSE 130
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 380 LEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLV 559
+ Y + + D++ +++ + RN N YI+NL +L DP+ +LK K ++ L
Sbjct: 648 ISYAMTEEQIDSSTELRQSMTRNVQNYLDYIKNLYHRLGPYDPS--LLALKQKTATMLAA 705
Query: 560 RL 565
L
Sbjct: 706 ML 707
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +2
Query: 356 VCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSL 529
VC LEYGL D A K + E + + IQ+LE + D T+P +
Sbjct: 452 VCMYIDDGLEYGLFRHAGDGAFKPATNYENFEYEERFLIQDLE--VIGVDTTKPVEPI 507
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +2
Query: 371 LLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQ 514
++ + L I++R++ ++QD + N K Y ++ LE++ N T+
Sbjct: 32 IIKINTQLSIKIRESENEIQDLIQENFTLKSYLVK-LEARFRNQSQTE 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,312
Number of Sequences: 5004
Number of extensions: 70376
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -