Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_O16
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145... 198 5e-51
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 196 1e-50
09_03_0048 + 11880848-11880952,11881030-11881312,11882667-118827... 36 0.057
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 31 1.2
12_02_1207 + 26995852-26996568 30 2.2
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716... 30 2.9
07_01_1013 - 8593690-8595006,8595275-8595928,8595951-8596065,859... 29 3.8
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 28 8.7
>07_01_1143 -
10711023-10711884,10713603-10713826,10714253-10714522,
10715071-10715175
Length = 486
Score = 198 bits (483), Expect = 5e-51
Identities = 91/159 (57%), Positives = 117/159 (73%), Gaps = 2/159 (1%)
Frame = +2
Query: 176 FQXLCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEICQTCSKLKN 355
F +C++CLGDNPY+RM + +Y KECKIC+RPFTVFRW PG R+KKTEICQTC KLKN
Sbjct: 19 FPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGRDARYKKTEICQTCCKLKN 78
Query: 356 VCQTCLLDLEYGLPIQVRDAALKV--QDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSL 529
VCQ CLLDLEYGLP+QVRD AL D +PR++VN+EY+ + + + +N
Sbjct: 79 VCQVCLLDLEYGLPVQVRDTALSTNSNDAIPRSDVNREYFAEEHDRRARAGIDYDSSNG- 137
Query: 530 KSKGSSDLLVRLARTAPYYKRNRPHVCSFWGQRRMXTRG 646
K++ ++D +++L RTAPYYKRNR HVCSF+ R TRG
Sbjct: 138 KAR-ANDTILKLQRTAPYYKRNRAHVCSFY-VRGECTRG 174
Score = 75.8 bits (178), Expect = 4e-14
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +3
Query: 615 FGVKGECXRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPXPEXLMRRAXAMPXLPP 791
F V+GEC RG ECPYRHE P + L+ QNIKDRYYGVNDP L+ +A MP L P
Sbjct: 165 FYVRGECTRGAECPYRHEMPETGE--LSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTP 221
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 196 bits (479), Expect = 1e-50
Identities = 90/159 (56%), Positives = 118/159 (74%), Gaps = 2/159 (1%)
Frame = +2
Query: 176 FQXLCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEICQTCSKLKN 355
F +C++CLGDNPY+RM + +Y KECKIC+RPFTVFRW PG R+KKTEICQTC KLKN
Sbjct: 19 FPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGRDARYKKTEICQTCCKLKN 78
Query: 356 VCQTCLLDLEYGLPIQVRDAALKV--QDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSL 529
VCQ CLLDLEYGLP+QVRD AL + D +PR++VN+EY+ + + + + ++
Sbjct: 79 VCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAEE-HDRKARAGIDYDSSHG 137
Query: 530 KSKGSSDLLVRLARTAPYYKRNRPHVCSFWGQRRMXTRG 646
K++ +D +++L RTAPYYKRNR HVCSF+ R TRG
Sbjct: 138 KAR-PNDTILKLQRTAPYYKRNRAHVCSFY-VRGECTRG 174
Score = 75.4 bits (177), Expect = 6e-14
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +3
Query: 615 FGVKGECXRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPXPEXLMRRAXAMPXLPP 791
F V+GEC RG ECPYRHE P + L+ QNIKDRYYGVNDP L+ +A MP L P
Sbjct: 165 FYVRGECTRGAECPYRHEMPETGE--LSQQNIKDRYYGVNDPVALKLLGKAGEMPSLTP 221
>09_03_0048 +
11880848-11880952,11881030-11881312,11882667-11882770,
11883998-11884416,11884698-11884998,11885136-11885232,
11885719-11885864,11885975-11886103
Length = 527
Score = 35.5 bits (78), Expect = 0.057
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 570 EQLHIIRGIDRTCARFGVKGECXRGEECPYRHEK 671
+Q H G +R C +F G C RG +C YRH++
Sbjct: 226 KQRHGEAGGNRLCFKFTSSGSCPRGSKCNYRHDE 259
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 588 RGIDRTCARFGVKGECXRGEECPYRHEK 671
R ++ +F G C RG+ CPY HE+
Sbjct: 372 RRTNKNPCKFFANGGCRRGQNCPYLHEE 399
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 621 VKGECXRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDP 740
VKG C RG C Y H+ T P D+ ++D G + P
Sbjct: 324 VKGRCSRGANCRYVHDDST-PHGGWRDE-VRDNAIGRSGP 361
>12_02_1207 + 26995852-26996568
Length = 238
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = +3
Query: 567 LEQLHIIRGIDRTCARFGVKGECXRGEECPYRHEKPTDPDDPLADQNIKDRYYGVND 737
L +L + G D C +FG C RG+ Y HE P D Y D
Sbjct: 165 LPELKVAGGCDSACGKFGGDAYCCRGK---YEHECPPTKYSKFFKDKCPDAYSYAKD 218
>01_05_0420 +
21969797-21970939,21971307-21971369,21971488-21971616,
21972241-21972291,21972669-21972809,21972922-21973122,
21973201-21973419,21973582-21973700,21973772-21973862,
21975864-21975965,21976291-21976315,21976522-21976592
Length = 784
Score = 29.9 bits (64), Expect = 2.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 600 RTCARFGVKGECXRGEECPYRHE 668
+ C + +G C +G++CPY HE
Sbjct: 462 KPCTHYA-RGSCLKGDDCPYDHE 483
>07_01_1013 -
8593690-8595006,8595275-8595928,8595951-8596065,
8596560-8596861,8596884-8597369
Length = 957
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 458 CLLRFEVGHPELLMQHLSLGLADHIPNPINMF 363
C LRF GHPEL + L G+ DH+ MF
Sbjct: 315 CCLRFFQGHPEL--RKLKNGMPDHLDELDRMF 344
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 570 EQLHIIRGIDRTCARFGVKGECXRGEECPYRHEK 671
E+L R C F KGEC RG C Y H++
Sbjct: 124 EELQKKREARGVCYAFQ-KGECNRGASCRYSHDE 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,747,748
Number of Sequences: 37544
Number of extensions: 425953
Number of successful extensions: 982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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