Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_O16
(894 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC003402-1|AAH03402.1| 420|Homo sapiens RNA binding motif prote... 272 1e-72
AK001152-1|BAA91521.1| 420|Homo sapiens protein ( Homo sapiens ... 272 1e-72
U39402-1|AAC99998.1| 367|Homo sapiens 199G4 protein. 112 1e-24
BC032753-1|AAH32753.1| 671|Homo sapiens zinc finger protein 443... 31 5.6
AB011414-1|BAA75543.1| 671|Homo sapiens Kruppel-type zinc finge... 31 5.6
BC040126-1|AAH40126.1| 659|Homo sapiens TRM1 tRNA methyltransfe... 31 7.5
BC018302-1|AAH18302.1| 630|Homo sapiens TRMT1 protein protein. 31 7.5
BC002492-1|AAH02492.1| 659|Homo sapiens TRM1 tRNA methyltransfe... 31 7.5
AK000251-1|BAA91031.1| 659|Homo sapiens protein ( Homo sapiens ... 31 7.5
AF196479-1|AAG28495.1| 659|Homo sapiens N2,N2-dimethylguanosine... 31 7.5
AC005546-2|AAC33150.1| 656|Homo sapiens R29425_1 protein. 31 7.5
AB028987-1|BAA83016.2| 1315|Homo sapiens KIAA1064 protein protein. 31 7.5
>BC003402-1|AAH03402.1| 420|Homo sapiens RNA binding motif protein
22 protein.
Length = 420
Score = 272 bits (667), Expect = 1e-72
Identities = 115/149 (77%), Positives = 133/149 (89%), Gaps = 1/149 (0%)
Frame = +2
Query: 176 FQXLCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEICQTCSKLKN 355
F LCQTCLG+NPYIRMTKEKYGKECKIC+RPFTVFRWCPG RMRFKKTE+CQTCSKLKN
Sbjct: 20 FPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKN 79
Query: 356 VCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSL-K 532
VCQTCLLDLEYGLPIQVRDA L +DD+P+++VNKEYY QN+E ++SNSD T+P L K
Sbjct: 80 VCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGK 139
Query: 533 SKGSSDLLVRLARTAPYYKRNRPHVCSFW 619
+ +SD+L++LART PYYKRNRPH+CSFW
Sbjct: 140 ATSTSDMLLKLARTTPYYKRNRPHICSFW 168
Score = 112 bits (270), Expect = 1e-24
Identities = 47/63 (74%), Positives = 52/63 (82%)
Frame = +3
Query: 615 FGVKGECXRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPXPEXLMRRAXAMPXLPPX 794
F VKGEC RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDP + L++RA MP L P
Sbjct: 167 FWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPP 226
Query: 795 KTK 803
+ K
Sbjct: 227 EDK 229
Score = 42.3 bits (95), Expect = 0.002
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +1
Query: 118 MATSKSTNTYNRQNWEDADF 177
MATS +NTYNRQNWEDADF
Sbjct: 1 MATSLGSNTYNRQNWEDADF 20
>AK001152-1|BAA91521.1| 420|Homo sapiens protein ( Homo sapiens
cDNA FLJ10290 fis, clone MAMMA1002385, weakly similar to
RIBONUCLEOPROTEIN RB97D. ).
Length = 420
Score = 272 bits (667), Expect = 1e-72
Identities = 115/149 (77%), Positives = 133/149 (89%), Gaps = 1/149 (0%)
Frame = +2
Query: 176 FQXLCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEICQTCSKLKN 355
F LCQTCLG+NPYIRMTKEKYGKECKIC+RPFTVFRWCPG RMRFKKTE+CQTCSKLKN
Sbjct: 20 FPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKN 79
Query: 356 VCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSL-K 532
VCQTCLLDLEYGLPIQVRDA L +DD+P+++VNKEYY QN+E ++SNSD T+P L K
Sbjct: 80 VCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGK 139
Query: 533 SKGSSDLLVRLARTAPYYKRNRPHVCSFW 619
+ +SD+L++LART PYYKRNRPH+CSFW
Sbjct: 140 ATSTSDMLLKLARTTPYYKRNRPHICSFW 168
Score = 112 bits (270), Expect = 1e-24
Identities = 47/63 (74%), Positives = 52/63 (82%)
Frame = +3
Query: 615 FGVKGECXRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPXPEXLMRRAXAMPXLPPX 794
F VKGEC RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDP + L++RA MP L P
Sbjct: 167 FWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPP 226
Query: 795 KTK 803
+ K
Sbjct: 227 EDK 229
Score = 42.3 bits (95), Expect = 0.002
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +1
Query: 118 MATSKSTNTYNRQNWEDADF 177
MATS +NTYNRQNWEDADF
Sbjct: 1 MATSLGSNTYNRQNWEDADF 20
>U39402-1|AAC99998.1| 367|Homo sapiens 199G4 protein.
Length = 367
Score = 112 bits (270), Expect = 1e-24
Identities = 47/63 (74%), Positives = 52/63 (82%)
Frame = +3
Query: 615 FGVKGECXRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPXPEXLMRRAXAMPXLPPX 794
F VKGEC RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDP + L++RA MP L P
Sbjct: 114 FWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPP 173
Query: 795 KTK 803
+ K
Sbjct: 174 EDK 176
Score = 66.9 bits (156), Expect = 9e-11
Identities = 28/43 (65%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Frame = +2
Query: 494 SNSDPTQPTNSL-KSKGSSDLLVRLARTAPYYKRNRPHVCSFW 619
SNSD T+P L K+ +SD+L++LART PYYKRNRPH+CSFW
Sbjct: 73 SNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFW 115
>BC032753-1|AAH32753.1| 671|Homo sapiens zinc finger protein 443
protein.
Length = 671
Score = 31.1 bits (67), Expect = 5.6
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +2
Query: 122 LHRSQQTHTIVRIGKTPIFQXLCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGA 301
L R + THT + K + + C N T EK ECK C + F+ FR+
Sbjct: 464 LRRHETTHTGEKPYKCTLGKAFIDFCSFQNHKTTHTGEK-PYECKECGKAFSRFRYLSRH 522
Query: 302 RMRF--KKTEICQTCSK 346
+ +K C+TC K
Sbjct: 523 KRTHTGEKPYECKTCRK 539
>AB011414-1|BAA75543.1| 671|Homo sapiens Kruppel-type zinc finger
protein protein.
Length = 671
Score = 31.1 bits (67), Expect = 5.6
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +2
Query: 122 LHRSQQTHTIVRIGKTPIFQXLCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGA 301
L R + THT + K + + C N T EK ECK C + F+ FR+
Sbjct: 464 LRRHETTHTGEKPYKCTLGKAFIDFCSFQNHKTTHTGEK-PYECKECGKAFSRFRYLSRH 522
Query: 302 RMRF--KKTEICQTCSK 346
+ +K C+TC K
Sbjct: 523 KRTHTGEKPYECKTCRK 539
>BC040126-1|AAH40126.1| 659|Homo sapiens TRM1 tRNA
methyltransferase 1 homolog (S. cerevisiae) protein.
Length = 659
Score = 30.7 bits (66), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 606 CARFGVKGECXRGEECPYRHEKPT 677
C RF +G C RG++C Y H PT
Sbjct: 606 CKRFK-EGTCQRGDQCCYSHSPPT 628
>BC018302-1|AAH18302.1| 630|Homo sapiens TRMT1 protein protein.
Length = 630
Score = 30.7 bits (66), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 606 CARFGVKGECXRGEECPYRHEKPT 677
C RF +G C RG++C Y H PT
Sbjct: 577 CKRFK-EGTCQRGDQCCYSHSPPT 599
>BC002492-1|AAH02492.1| 659|Homo sapiens TRM1 tRNA
methyltransferase 1 homolog (S. cerevisiae) protein.
Length = 659
Score = 30.7 bits (66), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 606 CARFGVKGECXRGEECPYRHEKPT 677
C RF +G C RG++C Y H PT
Sbjct: 606 CKRFK-EGTCQRGDQCCYSHSPPT 628
>AK000251-1|BAA91031.1| 659|Homo sapiens protein ( Homo sapiens
cDNA FLJ20244 fis, clone COLF6450. ).
Length = 659
Score = 30.7 bits (66), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 606 CARFGVKGECXRGEECPYRHEKPT 677
C RF +G C RG++C Y H PT
Sbjct: 606 CKRFK-EGTCQRGDQCCYSHSPPT 628
>AF196479-1|AAG28495.1| 659|Homo sapiens N2,N2-dimethylguanosine
tRNA methyltransferase protein.
Length = 659
Score = 30.7 bits (66), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 606 CARFGVKGECXRGEECPYRHEKPT 677
C RF +G C RG++C Y H PT
Sbjct: 606 CKRFK-EGTCQRGDQCCYSHSPPT 628
>AC005546-2|AAC33150.1| 656|Homo sapiens R29425_1 protein.
Length = 656
Score = 30.7 bits (66), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 606 CARFGVKGECXRGEECPYRHEKPT 677
C RF +G C RG++C Y H PT
Sbjct: 603 CKRFK-EGTCQRGDQCCYSHSPPT 625
>AB028987-1|BAA83016.2| 1315|Homo sapiens KIAA1064 protein protein.
Length = 1315
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 555 WCG*LEQLHIIRGIDRTCARFGVKGECXRGEECPYRHEKPTDPDDPLADQNIKD 716
+C E + G D C + G C G++C + H+ T+ L D+ + D
Sbjct: 444 FCARAENCPYMHG-DFPCKLYHTTGNCINGDDCMFSHDPLTEETRELLDKMLAD 496
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,454,700
Number of Sequences: 237096
Number of extensions: 2476366
Number of successful extensions: 4700
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4698
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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