Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_O11
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 213 4e-56
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 213 4e-56
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 122 7e-29
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 75 2e-14
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 69 7e-13
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 62 8e-11
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 57 3e-09
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 37 0.005
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.032
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.032
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.032
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 31 0.30
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 30 0.52
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 28 1.6
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 28 2.1
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 27 2.8
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|... 26 6.4
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil... 26 8.5
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 26 8.5
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 213 bits (519), Expect = 4e-56
Identities = 122/267 (45%), Positives = 163/267 (61%), Gaps = 6/267 (2%)
Frame = +2
Query: 80 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 259
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 260 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEV 436
DEQ+R +TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEV
Sbjct: 61 ADEQERGVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEV 115
Query: 437 TAALRVTDGALXGC*LCVWCVYKLKQYCVRLLPSASSLFCS*TKWTVLFLSSNLKLKNYT 616
TAALRVTDGAL V ++ CV+ + V+ + L
Sbjct: 116 TAALRVTDGALV-------VVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQ 168
Query: 617 RRSSVL*KMLTSL*PHITMMVVPWV-----EVRVDPSKGSVGFGSGLHGWAFTLKQFSXM 781
L + + + +++ + + +V P KG+V F SGLHGWAFT++QF+
Sbjct: 169 ISQEELYQNFARVVESVNVVISTYYDKVLGDCQVFPDKGTVAFASGLHGWAFTVRQFANR 228
Query: 782 YADKFXIDLXQAYEQVMGKKXFXPXTK 862
YA KF ID + +++ G+ F P TK
Sbjct: 229 YAKKFGIDRNKMMQRLWGENYFNPKTK 255
Score = 73.3 bits (172), Expect = 4e-14
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = +1
Query: 493 VCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYND 672
VCVQTETVLRQA+ ERI+P++ +NK+DR YQ F R+VE+VNV+I+TY D
Sbjct: 135 VCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYD 194
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 213 bits (519), Expect = 4e-56
Identities = 122/267 (45%), Positives = 163/267 (61%), Gaps = 6/267 (2%)
Frame = +2
Query: 80 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 259
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 260 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEV 436
DEQ+R +TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEV
Sbjct: 61 ADEQERGVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEV 115
Query: 437 TAALRVTDGALXGC*LCVWCVYKLKQYCVRLLPSASSLFCS*TKWTVLFLSSNLKLKNYT 616
TAALRVTDGAL V ++ CV+ + V+ + L
Sbjct: 116 TAALRVTDGALV-------VVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQ 168
Query: 617 RRSSVL*KMLTSL*PHITMMVVPWV-----EVRVDPSKGSVGFGSGLHGWAFTLKQFSXM 781
L + + + +++ + + +V P KG+V F SGLHGWAFT++QF+
Sbjct: 169 ISQEELYQNFARVVESVNVVISTYYDKVLGDCQVFPDKGTVAFASGLHGWAFTVRQFANR 228
Query: 782 YADKFXIDLXQAYEQVMGKKXFXPXTK 862
YA KF ID + +++ G+ F P TK
Sbjct: 229 YAKKFGIDRNKMMQRLWGENYFNPKTK 255
Score = 73.3 bits (172), Expect = 4e-14
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = +1
Query: 493 VCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYND 672
VCVQTETVLRQA+ ERI+P++ +NK+DR YQ F R+VE+VNV+I+TY D
Sbjct: 135 VCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYD 194
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 122 bits (294), Expect = 7e-29
Identities = 63/123 (51%), Positives = 89/123 (72%)
Frame = +2
Query: 98 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 277
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Query: 278 CITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVT 457
IT+KS+AIS+FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+
Sbjct: 67 GITMKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLC 118
Query: 458 DGA 466
DGA
Sbjct: 119 DGA 121
Score = 50.8 bits (116), Expect = 3e-07
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = +1
Query: 493 VCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY 666
VC QT TVLRQA +RIK IL +NKMDR + R+VE VN +I T+
Sbjct: 131 VCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHLLRLVEQVNAVIGTF 188
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 74.5 bits (175), Expect = 2e-14
Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Frame = +2
Query: 86 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA--GETRF-- 247
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I G+
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGA 100
Query: 248 -TDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF 424
D + E+++ ITI+S A +E + N Q+ EK + IN+ID+PGH+DF
Sbjct: 101 KMDFMELEREKGITIQSAATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDF 158
Query: 425 SSEVTAALRVTDGAL 469
+ EV ALRV DGA+
Sbjct: 159 TIEVERALRVLDGAV 173
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 69.3 bits (162), Expect = 7e-13
Identities = 42/122 (34%), Positives = 66/122 (54%)
Frame = +2
Query: 104 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 283
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D + E+ R I
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGI 106
Query: 284 TIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 463
T+K+ SM + + +L+NLID+PGHVDF +EV +L +G
Sbjct: 107 TVKAQTCSMIYYYH----------------GQSYLLNLIDTPGHVDFRAEVMHSLAACEG 150
Query: 464 AL 469
+
Sbjct: 151 CI 152
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 62.5 bits (145), Expect = 8e-11
Identities = 63/254 (24%), Positives = 110/254 (43%), Gaps = 3/254 (1%)
Frame = +2
Query: 110 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCIT 286
G++ ++R+ V H+ HGKS L D LV + R+TDT E++R ++
Sbjct: 132 GLLTGTDDVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMS 191
Query: 287 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 466
IKST +++ D + K+ F ID+PGHVDF EV A + ++DG
Sbjct: 192 IKSTPLTLAVS------------DMKGKT---FAFQCIDTPGHVDFVDEVAAPMAISDGV 236
Query: 467 LXGC*LCVWCVYKLKQYCVRLLPSASSLFCS*TKWTVLFLSSNLKLKN-YTRRSSVL*KM 643
+ + + + + + K L L L + Y + V+ ++
Sbjct: 237 VLVVDVIEGVMINTTRIIKHAILHDMPIVLVLNKVDRLILELRLPPNDAYHKLRHVIDEV 296
Query: 644 LTSL*PHITMMVVPWVEVRVDPSKGSVGFGSGLHGWAFTLKQFSXMYADKF-XIDLXQAY 820
++ + ++ RV P G+V F S G+ FTL F+ +Y D+ ID+
Sbjct: 297 NDNI-----CQISKDLKYRVSPELGNVCFASCDLGYCFTLSSFAKLYIDRHGGIDVDLFS 351
Query: 821 EQVMGKKXFXPXTK 862
+++ G F T+
Sbjct: 352 KRLWGDIYFDSKTR 365
Score = 29.9 bits (64), Expect = 0.52
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = +1
Query: 493 VCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYND 672
V + T +++ AI + +L +NK+DR Y + +++ VN I +
Sbjct: 246 VMINTTRIIKHAILHDMPIVLVLNKVDRLILELRLPPNDAYHKLRHVIDEVNDNICQISK 305
Query: 673 D 675
D
Sbjct: 306 D 306
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 57.2 bits (132), Expect = 3e-09
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Frame = +2
Query: 131 NIRNMSVIAHVDHGKSTLTDSLVSKAGI---IAGARAGETRFTDTRKDEQDRCITIKSTA 301
+IRN+ +IAH+D GK+TLT+ ++ G G+T D E+ R ITI S A
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDT-VMDYLPAERQRGITINSAA 85
Query: 302 ISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 469
IS T +QR INLID+PGH DF+ EV ++ V DGA+
Sbjct: 86 IS------------FTWRNQR--------INLIDTPGHADFTFEVERSVAVLDGAV 121
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 502 QTETVLRQAIAERIKPILFMNKMDR 576
QT+ V +QA I ++F+NKMDR
Sbjct: 133 QTKVVWKQATKRGIPKVIFVNKMDR 157
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 36.7 bits (81), Expect = 0.005
Identities = 31/116 (26%), Positives = 53/116 (45%)
Frame = +2
Query: 122 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTA 301
KK ++ N+ I HVDHGK+TLT ++ + A + D +E+ R ITI S
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISSAH 108
Query: 302 ISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 469
+ +E + + P + ++ N+I +D + V +A TDG +
Sbjct: 109 VE--YETANRHYAHVDCPGHAD-----YIKNMITGAATMDGAIIVVSA---TDGQM 154
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.032
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 211
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.032
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 211
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.032
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 211
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 30.7 bits (66), Expect = 0.30
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Frame = +2
Query: 95 VDEIRGMMDKKR-NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQ 271
+DE M D+ R I + K+ +T L S+ ++A A R+ D + +
Sbjct: 435 IDEFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDMKTPGE 494
Query: 272 DRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTA 442
+ I +ST +S F D++FI + E ++ ++I+ ++ SSE A
Sbjct: 495 N--IDFQSTILSRF------DMIFIVKDEHDETKDRNIARHVINLHTNLQESSETLA 543
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 29.9 bits (64), Expect = 0.52
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 143 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR----FTDTRKDEQDRCITIKSTAISM 310
++++ HVDHGK+TL D+ K+ I + G T+ FT D+ + IT T M
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQKIGAFT-VPFDKGSKFITFLDTPGHM 231
Query: 311 FFELEEK 331
FE K
Sbjct: 232 AFEAMRK 238
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 28.3 bits (60), Expect = 1.6
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 319
N+ I HVD GKSTL +++ G++ R E + E + S A+ E
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV-DKRTMEK--IEREAKEAGKESWYLSWALDSTSE 296
Query: 320 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF-SSEVTAALRVTDGAL 469
EK E + F +L+D+PGH + ++ + A + G L
Sbjct: 297 EREKGKTVEVGRAYFETEHRRF--SLLDAPGHKGYVTNMINGASQADIGVL 345
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = -3
Query: 498 THQTHSQQPXRAPSVTRSAA---VTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSF 328
T++ + R ++ R A + EE + P + K KK S F+ T
Sbjct: 40 TNKKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAKKNSSLDAFLNETPQT 99
Query: 327 SS-SSKNIEMAVDLMVMQRSCSSLRV 253
+S S++NI+ A+DL+ + S S ++
Sbjct: 100 ASYSARNIDDALDLLSLNNSSSKDKI 125
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.5 bits (58), Expect = 2.8
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Frame = +2
Query: 518 CVRLLPSASSLFCS*TKWTVLFLSSNLKLKNYTRRSSVL*KMLTSL*PHITMM-----VV 682
C L A +LF S K++ F S N++ K ++ S +++ HIT + ++
Sbjct: 345 CECLNIKAYTLFVSLRKYS--FSSKNVQSKEKSKIMSCFTLLISCA--HITYLLDCHGII 400
Query: 683 PWVEVRVDPSKGSVGFGSGLHGWAFTLKQFS 775
+ + V+ + G GSG W FT K F+
Sbjct: 401 QFYQKLVETKNKAEGKGSGQSFWLFTSKPFA 431
>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 686 WVEVRVDPSKGSVGFGSGLHG-WAFTLKQFSXMYADKFXIDLXQAYEQV 829
W+ V +G G+G HG WA L Q + + K DL + +Q+
Sbjct: 77 WISPIVKNIEGVTGYGEAYHGYWAEDLTQLNPHFGTK--QDLTELVDQL 123
>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 136 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQLPYASNGVRF 14
DIPL + P D + RE + RW + +L + Y ++ F
Sbjct: 102 DIPLRLIQPYDPLSRETVYMRWKELAMLDKTVDYQNHNQSF 142
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 381 PFSLFSRWSGFVMNTK-SFSSSSKNIEMAVDLMVMQR 274
P S +S W+ V+NTK SFS ++M +L+ Q+
Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELIDGQK 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,612,421
Number of Sequences: 5004
Number of extensions: 73681
Number of successful extensions: 242
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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