Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_O08
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    28   1.4  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    27   3.3  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    27   3.3  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    27   4.4  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.4  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   5.8  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   5.8  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 324 SESLSRCLWRNTLEHLSNF 268
           S+SL  C W+N LE LSNF
Sbjct: 489 SDSLKVCDWQNDLEGLSNF 507


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 54  VDMFLTFV*MKVFHKKIRYKQPRKTLMQSDIWCLV*VPFI*K 179
           +D F  F+    ++ KI  K PR    + + W L+  PFI K
Sbjct: 77  LDTFTDFICRTAYYMKIPIKGPRPLPNKVESWTLLRSPFIHK 118


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 531 RCSVLSQDHRNNISHTNKTRQYRILNDINP 442
           R S LSQ++ N I+HT   R +R + + +P
Sbjct: 33  RDSFLSQENMNKINHTTIERLFREMTENDP 62


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
 Frame = -1

Query: 693 IVYKMADYTLTVEHYTIPHNTLLELISFNLIGVLTSYDLGIIRGVVQFLKFHVIRCSV-- 520
           I  +  DY L    Y IPH    EL SF+   +     + ++R    F   +  RC+   
Sbjct: 192 IKVRTIDYALLFITYKIPHFARKELSSFSDSAIQCLDIVALLRAFSLFAHHYSYRCNTWF 251

Query: 519 LSQDHRNNISHTNKTRQ 469
               H   ++  N   Q
Sbjct: 252 YLSKHMKKVASANMDAQ 268


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 525 SVLSQDHRNNI-SHTNKTRQYRILNDINPKD 436
           S LS  + NN+ S    +RQY   +DINP D
Sbjct: 84  SFLSDHNNNNLFSDDTISRQYSNTDDINPSD 114


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 519 LSQDHRNNISHTNKTRQYRILNDINPKDVY*PRTFMK 409
           LS D   N S   KT  Y+IL  +NPKDV     ++K
Sbjct: 11  LSSDGTLNESSIYKT--YQILESLNPKDVDTKENYIK 45


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +3

Query: 390 MHIFAMVS*MYAVNTHLSDLYHLVFY--IVASY*CVICYFCDLVI 518
           M +F +VS  + +   L++LYHLV Y  +  ++   + + C++VI
Sbjct: 371 MFLFVIVSGPFQIVLALTNLYHLVGYGALSGAFVTFLLFPCNVVI 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,727
Number of Sequences: 5004
Number of extensions: 64126
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)