Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_O06
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   3.6  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    27   4.8  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    26   8.4  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   8.4  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    26   8.4  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   8.4  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   8.4  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   8.4  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.4  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +2

Query: 401  SSLLEDTPSSSTNGTETLVPEDSLYALMPPFETFLNVDKTARLRHFFDNVKTGELIIGAV 580
            SSL   +PS ST G E  + +D  Y L+  +E    ++  A + H F      +  + A 
Sbjct: 1603 SSLRNVSPSESTGGYEGCIFDDQQYQLL--YELCERLEDHAAILHGFPEPPPCDTGLAAP 1660

Query: 581  INR 589
            +N+
Sbjct: 1661 VNQ 1663


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 296 FAVYQSRHKHLTFQDRSKRLKLHQFIAKEAGALFDS-SLLEDTPS 427
           + +YQ  H HL +  +  R  +H+F+   A AL +S  LL D+ S
Sbjct: 321 YELYQ--HSHLGYGLKEARKLIHKFVLNNAEALKESLELLGDSTS 363


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 620 CTAGPTSRYVADIXVKAFLPVGNIIQAVDKKNVSRNY 730
           C+  PTS+  A I  +A + V N+   V+ KN++ +Y
Sbjct: 341 CSGLPTSKTYAAITAQAPVMVHNLWSFVNGKNLTASY 377


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 422 PSSSTNGTETLVP 460
           P+ STNGTET +P
Sbjct: 547 PNGSTNGTETFIP 559


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 485 PPFETFLNVDKTARLRHFFDNVKTGELIIGAVINRTASGMMLKV 616
           P F  FLN+DK       F+  +  EL  G++  R  S +  KV
Sbjct: 35  PSFADFLNMDKPLTADEAFELDRKVELPNGSIHKRLPSWLKTKV 78


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 125 NVTT*LRAGKKRI*MDPLLDASL 193
           NV T L   K+R+ +DPL+D SL
Sbjct: 271 NVVTCLDCKKERVAVDPLMDISL 293


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 239 WESERGEDDLAKIGVGALDFAVYQSRHKHLT 331
           W+SE  EDD+  +GV      ++    K +T
Sbjct: 63  WDSEENEDDITDVGVPGSHEIMFPGHSKIVT 93


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 197 PLRTHPIKDPFKFFFSQHEVMLLRFQKNSVNVIMIEKKPIQ*SSEMATNE 48
           P   HPI  P     SQH+    + +K +V  I+  K P   SS  A ++
Sbjct: 101 PRPMHPISHPL----SQHKTPEFKHRKRNVESILTPKNPSLFSSSNAASQ 146


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 624 VQRTLSIIPDAVLLITAPMISSPVFTLSKKCLNLAVLSTFRNVSNGGIN 478
           + R++S+ P     I+ P ISS    L KK  +  + +TF + +N  +N
Sbjct: 74  MNRSISVPPTN---ISVPQISSNPLNLMKKSSDNDIFTTFNDTTNDCMN 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,086
Number of Sequences: 5004
Number of extensions: 68203
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)