Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_O06
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0114 - 886404-887111                                             31   1.2  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    30   2.9  
05_07_0043 - 27284814-27285190,27285287-27285488,27285576-272856...    29   3.8  
04_04_0974 + 29831274-29833184                                         28   8.8  
03_06_0158 + 32052426-32052529,32052645-32052702,32052847-320529...    28   8.8  

>11_01_0114 - 886404-887111
          Length = 235

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +2

Query: 419 TPSSSTNGTETLVPEDSLYALMPPFETFLNVD----KTARLRHFFDNVKTGELIIGAVIN 586
           T +++ NG+ +++P  ++ A  PPF T  + D    +  R R          L++  V+ 
Sbjct: 5   TAAAAGNGSGSILPTHTIAATAPPFRTHKDADLESRRRRRRRRCLCCCLLVTLVVLLVLA 64

Query: 587 RTASGMMLKVLCTAGPTSRYVA 652
            T   + L VL    PT+R V+
Sbjct: 65  ITLLVLFLTVLRVRDPTTRLVS 86


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = -2

Query: 498 VSNGGINAYKLSSGTRVSVPLVDDEGVSSSKEESNKAPASLAM 370
           ++ G +   + +SG+  S+  VDD GVSS+ EE  +A A+LA+
Sbjct: 114 INMGLLVGRRRNSGSEESI--VDDGGVSSNDEEHREAKAALAV 154


>05_07_0043 -
           27284814-27285190,27285287-27285488,27285576-27285650,
           27285743-27285816,27285909-27285996,27286081-27286203,
           27288374-27288580,27288631-27288636
          Length = 383

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
 Frame = +2

Query: 233 KTWESERGED---DLAKIGVGALDFAVYQSRHKHLTFQDRSKRLKLHQFIAKEAGALFDS 403
           + WE+ERG +   D  ++ +   ++ V +   +    + R ++ KL      E  AL+ S
Sbjct: 152 RAWETERGNEFTYDGVRLILMLEEYMVVRQEKEQERKRQRDQK-KLQDQRKAEQEALYGS 210

Query: 404 SLLEDTPSSSTNGTETLVPEDSLYALMPPFETFLNVDKTARLRHFFDNVKT 556
                 PSSS + +   VP +S   + PP    L+  KT R     +++ T
Sbjct: 211 K-----PSSSKSHSTKKVPRNSTPGVQPPKSEILH-SKTIRATKKTEDINT 255


>04_04_0974 + 29831274-29833184
          Length = 636

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 389 ALFDSSLLEDTPSSSTNGTETLVPEDSLYALMPPFETFLNVDKTA 523
           A  +  LLED    S  GT T V + +L A+  PF   L   + A
Sbjct: 83  AYINQFLLEDEEDESCPGTITSVEDSALLAVEKPFVDILTASQEA 127


>03_06_0158 +
           32052426-32052529,32052645-32052702,32052847-32052983,
           32053824-32053899,32053965-32054017,32054415-32054896,
           32055097-32055184,32055482-32055665,32056443-32056640,
           32057351-32057534,32057982-32058109,32058236-32058317,
           32058444-32058496,32058625-32058700,32059253-32059314
          Length = 654

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +2

Query: 278 GVGALDFAVYQSRHKHLTFQDRSKRLKLHQFIAKEAGALFDSSLLEDTPSSSTNGTETLV 457
           GVG  D+ ++   + ++ FQ+ S  +  H   A +A  L DS  L +  +  T G +   
Sbjct: 593 GVGPWDYPIFSDLYPNVMFQEPSGLIYGHVVEADQA-FLPDSHELANADNQFTGGNDDSA 651

Query: 458 PED 466
           P D
Sbjct: 652 PFD 654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,461,236
Number of Sequences: 37544
Number of extensions: 417401
Number of successful extensions: 871
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)