Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_O05
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...   168   8e-43
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          30   0.52 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.90 
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    28   1.6  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   3.6  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    27   4.8  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   4.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.3  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    26   8.4  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score =  168 bits (409), Expect = 8e-43
 Identities = 82/131 (62%), Positives = 97/131 (74%)
 Frame = +2

Query: 248 NLDEIIAESDGIMVARGDLGIEIPPEKVFLAQKTMIARCNRVGKPVICATQMLESMVKKP 427
           N D I+  +DGIMVARGDLGIEIP  +VF+AQK MIA+CN  GKPV CATQMLESM   P
Sbjct: 256 NFDSILDVTDGIMVARGDLGIEIPASQVFVAQKMMIAKCNIAGKPVACATQMLESMTYNP 315

Query: 428 RPTRAEISDVANAILDGADCVMLSGETAKGDYPVECVHTMANICKEAEAVIWHRQLFNDL 607
           RPTRAE+SDV NA+LDGAD VMLSGET KG YPVE V  MA   + AEA I +  L+ ++
Sbjct: 316 RPTRAEVSDVGNAVLDGADLVMLSGETTKGSYPVEAVTYMAETARVAEASIPYGSLYQEM 375

Query: 608 VSEVKPPIDPA 640
              V+ P++ A
Sbjct: 376 FGLVRRPLECA 386



 Score =  111 bits (266), Expect = 2e-25
 Identities = 54/82 (65%), Positives = 62/82 (75%)
 Frame = +1

Query: 7   NGGMLGSRKGVNLPGIPVDLPAVSEKDKSDLLFGVEQGVDMIFASFIRNGAALHEIRGIL 186
           N G + S+KGVNLP   VDLPA+SEKDK+DL FGV+ GVDMIFASFIR    +  IR +L
Sbjct: 176 NNGKISSKKGVNLPKTDVDLPALSEKDKADLRFGVKNGVDMIFASFIRRAEDVIHIREVL 235

Query: 187 GEKGKNIKIISKIENHQGNGQF 252
           GE+GKNIKII KIEN QG   F
Sbjct: 236 GEEGKNIKIICKIENQQGVNNF 257



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 28/78 (35%), Positives = 37/78 (47%)
 Frame = +3

Query: 663 VEAATKCLASAIVVITTSGKSAHLLSKYRPRCXXXXXXXXXXXXXXRCTSTGGVLPIVYX 842
           + A+ +  A AIVV++TSG +A L SKYRP                +     GV P++Y 
Sbjct: 395 IGASIESDAKAIVVLSTSGNTARLCSKYRP-SIPIVMVTRCPQRARQSHLNRGVYPVIYE 453

Query: 843 XPTASDWLKDXDNRXQXG 896
               SDW KD D R   G
Sbjct: 454 KEPLSDWQKDVDARVAYG 471


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 402 CWNPWLRSPVPPEPRSLTWPTPSSTELTA 488
           C NP  R   P + R++TW  PS TE T+
Sbjct: 259 CLNPACRFIHPTKSRNMTWRPPSKTEETS 287


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
 Frame = -2

Query: 576  TASASLQMLAMV*THS-TG*SPLAVSPESITQSAPSRMALA--TSEISALVGRGFLT--M 412
            TAS +    + V T S T  S  +++  S+T S+ S +A A  T   ++ V    +T  +
Sbjct: 1019 TASVTDSSTSSVATASATDSSTSSIAVASVTGSSTSSVATASATDSSTSSVATASITGSL 1078

Query: 411  DSSI*VAQITGFPTRLHLAI-MVFWARNTFSGGISIPRSPRATMIPSDSAIISSKLT 244
             SSI  A +TG PT    A+        T S  I+   S  A  + SD+A  SS +T
Sbjct: 1079 SSSIATASVTGSPTSSVTAVSSTSSVEGTASSTIAAAAS--AATLSSDAASGSSTVT 1133


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 56  PWTYPQSPRRTSRTCSSASNKAL 124
           P T P SPRR+ +  S A NKAL
Sbjct: 7   PSTAPSSPRRSIQRISDAKNKAL 29


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 3   LERRYARIPERRQPARHTRGPTRSLREGQV 92
           L  RY  IPE R+ ARH   PT   +  ++
Sbjct: 368 LRERYKHIPEIRRIARHRHLPTNVKKAAEI 397


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -1

Query: 523 IVALGSLPGEHHAVSSVEDGVGHVRDLGSGGTGLLNH-GFQHLSRTDHWFSNPIASGDHG 347
           IV    +    HA    E+   +++D+GS     LNH      S+T   +  PI++ D  
Sbjct: 77  IVFRSKVVSRRHAQIFYENNTWYIQDMGSSSGTFLNHVRLSPPSKTSKPY--PISNNDIL 134

Query: 346 LLGEEY 329
            LG +Y
Sbjct: 135 QLGADY 140


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 88  KSDLLFGVEQGVDMIFASFIRNGAALHEIRGIL 186
           K +LLFGV+ G D+IF   +       EIR  L
Sbjct: 341 KYELLFGVQSGGDLIFVPTVSLTIIQSEIRNRL 373


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -3

Query: 194  FSPRMPRISCSAAPLRMNDAKIISTPCSTPKSRSDLSFSETAGRSTGMPGRLTP 33
            FSPRM  ++ S +PL MN A   S       S     F+  A      P  L P
Sbjct: 1588 FSPRMGPVNNSGSPLAMNAAGQPSLAVPAVPSAPSNHFNPFAKMQPPAPSPLQP 1641


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 38  STCPAYPWTYPQSPRRTSRTCS 103
           S  P  PW YP SP   +RT S
Sbjct: 29  SVNPITPWGYPASPISIARTTS 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,001
Number of Sequences: 5004
Number of extensions: 66010
Number of successful extensions: 220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)