Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_N21
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    79   8e-16
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    66   6e-12
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    48   2e-06
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   3.4  
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    27   4.4  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   7.8  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   7.8  

>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 65/205 (31%), Positives = 86/205 (41%), Gaps = 13/205 (6%)
 Frame = +2

Query: 140 LKKPSKRQPARLRYKIEKKVKEHNRKQRXXXXXXXXXXXXXPIQ--IPNICPFKEDILXX 313
           LKK SKR+  RLR +IEKK  E  RKQ+             P    IPN  P+K+ IL  
Sbjct: 4   LKKKSKRRTTRLRSRIEKKAAESKRKQKRADKKNPQWKSRIPKDPGIPNSFPYKDKILAE 63

Query: 314 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTNLNTLVTNAQARGK-------VH 472
                                                 ++ +   AQA          + 
Sbjct: 64  IEEQKRIREEEKLARRASGQVDAAMEEEDAVDENGSLMISKIAEAAQASNPDDEEEFVME 123

Query: 473 EAFKGDSEPSQDVE-FGKDRKQENSLKTYYREFXKVISEAEVILEIVDARDPLGTRCIQV 649
           E   G++    D E +    K + S K Y +EF KV+  ++VIL ++DARDP GTR   V
Sbjct: 124 EDNLGEAPLLVDSESYEASVKADTSRKAYDKEFKKVVEASDVILYVLDARDPEGTRSKDV 183

Query: 650 EEAVRESG---KRLVLVLNKADLVP 715
           E  V  S    KRL+ V+NK DLVP
Sbjct: 184 ERQVLASSAEEKRLIFVINKIDLVP 208


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
 Frame = +2

Query: 464 KVHEAFKGDSEPSQDVEFG-KDRK-QENSLKTYYREFXKVISEAEVILEIVDARDPLGTR 637
           K+ E    + + S DV    +D    +   K  + E  KVI  ++V+++++DARDP+GTR
Sbjct: 174 KIEERILANPDESDDVMLAARDAIFSKGQSKRIWNELYKVIDSSDVLIQVLDARDPVGTR 233

Query: 638 CIQVEEAVRE--SGKRLVLVLNKADLVPRGQPDSMVKV 745
           C  VE  +R   S K ++LVLNK DLVP     + VK+
Sbjct: 234 CGTVERYLRNEASHKHMILVLNKVDLVPTSVAAAWVKI 271


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
 Frame = +2

Query: 503 QDVEFGKDRKQENSLKTYYREFXKVISEAEVILEIVDARDPLGTRCIQVEEAVRESG--K 676
           QDVE       E +L+ + R+  +VI  ++V+++IVDAR+PL  R   +E+ V+E G  K
Sbjct: 144 QDVEGFIVTPFERNLEIW-RQLWRVIERSDVVVQIVDARNPLFFRSAHLEQYVKEVGPSK 202

Query: 677 RLVLVLNKADLVPRGQ 724
           +  L++NKAD++   Q
Sbjct: 203 KNFLLVNKADMLTEEQ 218


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = -2

Query: 241 ILFSFFTLLTIMLFHFFFYFVSKTC 167
           +LF+   +L+++  +FFF+++ + C
Sbjct: 24  LLFALVIILSVIFINFFFFYLCRCC 48


>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
 Frame = +2

Query: 482 KGDSEPSQDVEFGKDRKQENSLK-TYYREFXKVISEAEVILE--IVDARDPLGTRCIQVE 652
           KGDS+P    E G+ R     +K         ++ E E   +  ++D  DPL  +   +E
Sbjct: 115 KGDSDPLDVCEIGEARGYTGQVKQVKVLGVMALLDEGETDWKVIVIDVNDPLAPKLNDIE 174

Query: 653 EAVRESGKRLVLVLN---KADLVPRGQPDS 733
           +  R     L+   N   +   +P G+P++
Sbjct: 175 DVERHM-PGLIRATNEWFRIYKIPDGKPEN 203


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 277 RNLNWLGFLRFRILFS 230
           RNLNW  +L F ILFS
Sbjct: 449 RNLNWNVYLNFIILFS 464


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 267  IGLVFLDLGFFLASLRCLR 211
            +G+ F+DLG +  S +CLR
Sbjct: 1201 VGVSFIDLGSYTLSAKCLR 1219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,162
Number of Sequences: 5004
Number of extensions: 45842
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)