Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_N13
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0017 + 12297539-12297697,12298191-12298229,12298457-122988... 32 0.63
02_04_0054 + 19279579-19280772 32 0.63
10_08_0651 - 19594149-19594507,19595165-19595219 31 0.84
12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136 31 1.5
07_03_1551 + 27646445-27647096,27647229-27647374 30 2.6
03_04_0175 - 18092055-18092583,18092819-18093378 29 3.4
01_02_0007 + 10132380-10133201 25 4.3
12_02_0279 - 16704284-16704925 29 4.5
12_02_0043 + 12762257-12762678,12762751-12762778 29 4.5
07_03_0557 + 19447367-19447517,19447630-19447730,19448359-194484... 29 5.9
03_05_0840 + 28101420-28101779,28101878-28101991,28102131-281022... 29 5.9
>11_04_0017 +
12297539-12297697,12298191-12298229,12298457-12298825,
12298921-12299058
Length = 234
Score = 31.9 bits (69), Expect = 0.63
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 330 QVPRAGLRRRGGRSEDVQKQGRV*GRVLGETDCYQHRQQKR 208
+VP A ++ GGR D + GR+ G G C RQ K+
Sbjct: 2 EVPAASVKGGGGRRSDEEAPGRIAGNGAGNVACLFTRQGKK 42
>02_04_0054 + 19279579-19280772
Length = 397
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -1
Query: 465 RHAGVINVHPFIVLVTQIVGDAFARFPVLIRKHAVALRRLNDDVFQVPRAGL--RRRGGR 292
RH G+ + + T ++ +A+ +L+ KHA L + ++ V RA L RRR R
Sbjct: 316 RHPGIFYLSRVLGTQTVVLREAYGGGSLLLAKHAHPLATIREEYSAVMRAALPPRRRRSR 375
Query: 291 SED 283
D
Sbjct: 376 ESD 378
>10_08_0651 - 19594149-19594507,19595165-19595219
Length = 137
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 690 PAEPPPRGLAEXSLRTHPSGDGHSDPHG 607
PA+ PPRG + GDGHSD G
Sbjct: 82 PAKAPPRGFIYIDSNSDDDGDGHSDGDG 109
>12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136
Length = 257
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 481 DVRFGEEDCQESVEICCTNPITEPVPKPQPDPS 579
D+RF ++D E++E P+++P +P+P PS
Sbjct: 166 DLRFIQKDSGETLEFHSKEPLSQPPIEPEPCPS 198
>07_03_1551 + 27646445-27647096,27647229-27647374
Length = 265
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -1
Query: 723 LLLQRTIRSKRPAEPPPRGLAEXSLRTHPSGDGHSDPHGVPVAASLQLRGVRLRLWHG 550
L+ +R R+K+P PPP A ++R + ++ V A L V WHG
Sbjct: 66 LIPRRGQRAKQPTSPPPTAAAAAAMRRAAEREAEAERQLVGCAVPLFRPYVAQLPWHG 123
>03_04_0175 - 18092055-18092583,18092819-18093378
Length = 362
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 481 DVRFGEEDCQESVEICCTNPITEPVPKPQPDPS 579
D+RF ++D E++E+ P ++P +P+P PS
Sbjct: 226 DLRFIQKDSGETLELHSKEPPSQPPIEPEPCPS 258
>01_02_0007 + 10132380-10133201
Length = 273
Score = 25.4 bits (53), Expect(2) = 4.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 535 NPITEPVPKPQPDP 576
NP +P+P+PQP P
Sbjct: 67 NPQPQPLPQPQPQP 80
Score = 22.2 bits (45), Expect(2) = 4.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 550 PVPKPQPDPSKLKG 591
P P+PQP P L G
Sbjct: 88 PQPQPQPQPLPLPG 101
>12_02_0279 - 16704284-16704925
Length = 213
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 496 EEDCQESVEICCTNPITEPVPKPQPDPSKLKG 591
+ED E++E+ P ++P KP+P PS +G
Sbjct: 72 KEDSGETLELLSREPASQPPIKPKPCPSGSQG 103
>12_02_0043 + 12762257-12762678,12762751-12762778
Length = 149
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 481 DVRFGEEDCQESVEICCTNPITEPVPKPQPDPS 579
D+ F +ED E++E+ P ++P +P+P PS
Sbjct: 17 DLHFIQEDSGETLELHSKEPPSQPPIEPEPCPS 49
>07_03_0557 +
19447367-19447517,19447630-19447730,19448359-19448480,
19448725-19448912,19449000-19449178,19449370-19449711,
19449795-19449859,19450259-19450317,19450486-19450573,
19450653-19450722,19450759-19450992,19451072-19451411,
19451643-19451691,19452690-19452780,19453077-19453442
Length = 814
Score = 28.7 bits (61), Expect = 5.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 670 PGWWLCWTL 696
PGWWLCW L
Sbjct: 689 PGWWLCWWL 697
>03_05_0840 +
28101420-28101779,28101878-28101991,28102131-28102229,
28102800-28102874,28103311-28103378,28104015-28104087
Length = 262
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 678 PPRGLAEXSLRTHPSGDGHSDPHGVPVAASLQLRGVRLRLWHG-FRYGISAADLHALLAV 502
PPR + S HP S P G +A + G R W G +R G+S+ + LA
Sbjct: 21 PPRAEPDASSSFHPPASSSSSPRGGRLALAAAQPGSG-RRWVGRWRAGVSS---FSFLAP 76
Query: 501 FFA 493
FFA
Sbjct: 77 FFA 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,180,500
Number of Sequences: 37544
Number of extensions: 469969
Number of successful extensions: 1965
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1942
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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