Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_N11
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.91 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   2.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 270 PTEASYPVKVSHFSFSPVIDVVYQPSTNRYLHEVVHTEV 154
           PT  +   +   FSF     +VY+PS  R  HE+  T+V
Sbjct: 495 PTPTTESEERRFFSFHQWGILVYEPSACRPRHEIRSTDV 533


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +1

Query: 64  KTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMYHLVKIPIGRGLVHHVDYWGEGKVTN 243
           K     K    S+ + +  ED++ P      +  +  ++IPI R L        EG  T+
Sbjct: 146 KNAGNNKITMKSKKEQNAEEDIVDPVEENETYDEFDTIRIPIVRSLSKSPPN-DEGIETD 204

Query: 244 LDRVRG 261
            DR +G
Sbjct: 205 SDRRKG 210


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -3

Query: 354 HDGNPVGYLLSLAVALTHERKLFVHV-----VAPTEAS 256
           H+GN      +LA  ++H ++L VHV     V PT+ S
Sbjct: 679 HNGNYSCVARNLAAEVSHTQRLVVHVPPRWIVEPTDVS 716


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 255 KRLPSELQRERTVCARE*GPQQGKAN 332
           + L + L  E++VC  E G  Q KAN
Sbjct: 20  EELKTRLHTEQSVCKTETGIDQQKAN 45


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +1

Query: 208 HVDYWGEG----KVTNLDRVRGFRRSYNVNEQFALVSKGHSK 321
           H+  W  G    K+ +LD  +     YN N ++ +V   HS+
Sbjct: 176 HIASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSE 217


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 3   LDTQQHAQPQYDNQFQSFPGKNTV 74
           +DT+Q + PQY+     + G   +
Sbjct: 281 VDTEQFSNPQYEENNVQYEGSQDI 304


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 503 YPYATTSPSEALTI 462
           YP ATTSP    TI
Sbjct: 396 YPMATTSPQSQSTI 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,346
Number of Sequences: 438
Number of extensions: 5114
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)