Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_N10
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 177 1e-45
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz... 74 3e-14
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 59 7e-10
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ... 37 0.004
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 36 0.010
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 30 0.37
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 27 2.6
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 27 2.6
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 4.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 4.6
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 4.6
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 26 8.0
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 177 bits (432), Expect = 1e-45
Identities = 87/167 (52%), Positives = 117/167 (70%)
Frame = +3
Query: 282 EDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKN 461
++ IDE LYSRQLYVLGH+AM++M+ S+VLI G GLGVEIAKNV L GVKSVTL+D +
Sbjct: 12 QNTIDEGLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQP 71
Query: 462 CTVADLSSQFYLSETVIGQNRALTSCEQLSELNHYVPTTAYTGPLTEDFLRKFRVVVLTG 641
+ DLSSQ++L+E IG RA + +L+ELN YVP + L+ ++L+ F+ VV+T
Sbjct: 72 TRIEDLSSQYFLTEDDIGVPRAKVTVSKLAELNQYVPVSV-VDELSTEYLKNFKCVVVTE 130
Query: 642 ASWAEQERVAAFTHANNIALVIADTRGLFSQVFCDFGPEFTVLDVNG 782
S +Q + FTH N+IA + AD+RGLF +FCDFG F D +G
Sbjct: 131 TSLTKQLEINDFTHKNHIAYIAADSRGLFGSIFCDFGENFICTDTDG 177
>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
Rad31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 73.7 bits (173), Expect = 3e-14
Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 3/166 (1%)
Frame = +3
Query: 258 MANNGARVEDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKS 437
M N+ E EI +LY RQ+ + G +A + + S VL+ L EIAKN++L G+
Sbjct: 1 MGNHNINAE-EI--ALYDRQIRLWGFNAQQALKQSRVLLITASPLANEIAKNLVLSGIGK 57
Query: 438 VTLHDDKNCTVADLSSQFYLSETVIGQNRALTSCEQLSELNHYV---PTTAYTGPLTEDF 608
+ + D D+ QF++ + IGQ RA ++L ELN V T+ + E
Sbjct: 58 LCVLDSMTVYEKDVEEQFFIEASDIGQLRANVFKKKLHELNPLVEIDTDTSLISEIDEGK 117
Query: 609 LRKFRVVVLTGASWAEQERVAAFTHANNIALVIADTRGLFSQVFCD 746
+ KF +V+ T + E R+ T N + GL+ FCD
Sbjct: 118 ISKFSMVIATQLDYEEFCRINELTRICNASFYATSCFGLYGFAFCD 163
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 59.3 bits (137), Expect = 7e-10
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Frame = +3
Query: 336 DAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKNCTVADLSSQFYLSETVIG 515
+A+R S+ VL+ G GG+G E+ KN+++ GVK V + D +++L+ QF + +
Sbjct: 18 EALRNFKSAKVLLVGAGGIGCELLKNLLMSGVKEVHIIDLDTIDLSNLNRQFLFRKKHVK 77
Query: 516 QNRALTSCEQLSELNHYVPTTAYTGPLTED-----FLRKFRVVVLTGASWAEQERVAAFT 680
Q +A+ + + S N V AY + ED + R+F +V + + V
Sbjct: 78 QPKAIVAAKTASSFNPNVKLEAYHANIKEDRFNVAWFRQFDLVFNALDNLDARRHVNKQC 137
Query: 681 HANNIALVIADTRGLFSQV 737
++ L+ + T G QV
Sbjct: 138 LLASVPLIESGTTGFLGQV 156
>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 36.7 bits (81), Expect = 0.004
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +3
Query: 306 YSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKNCTVADLSS 485
Y RQ+ + + + S V + +G E KN+IL G+ S + DD + +
Sbjct: 10 YDRQVRLWKAEGQNAIEKSHVCLLYANTVGCEALKNLILPGIGSFAVVDDTSVDFSMDGM 69
Query: 486 QFYLSETVIGQNRALTSCEQLSELN 560
F++ G++RA + L +LN
Sbjct: 70 NFFIQYDQEGKSRARCTASLLQQLN 94
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 35.5 bits (78), Expect = 0.010
Identities = 19/106 (17%), Positives = 46/106 (43%)
Frame = +3
Query: 264 NNGARVEDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVT 443
+ G ++ + +R G D M R+ +S V++ G GG+G + + GV+ +
Sbjct: 95 SKGVPYDENLIREQLARNYAFFGEDGMERLRNSFVIVVGCGGVGSWVINMLARSGVQKIR 154
Query: 444 LHDDKNCTVADLSSQFYLSETVIGQNRALTSCEQLSELNHYVPTTA 581
+ D +++ L+ + +G + L + + + ++ A
Sbjct: 155 IVDFDQVSLSSLNRHSIATLQDVGTPKTLAIKKAIKKFAPWIEVDA 200
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 348 RMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHD 452
R+ +S L+ G G LG +A+N++ GV+ VT D
Sbjct: 332 RIQNSKCLLLGAGTLGCGVARNLLSWGVRHVTFVD 366
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 200 VNGIIGDFSTRHRARTRTILPRILVALTIKKK 105
V + D + RHRAR R+I RIL + ++KK
Sbjct: 102 VEAMYADMAARHRARFRSI--RILKVVEVEKK 131
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 200 VNGIIGDFSTRHRARTRTILPRILVALTIKKK 105
V + D + RHRAR R+I RIL + ++KK
Sbjct: 102 VEAMYADMAARHRARFRSI--RILKVVEVEKK 131
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.6 bits (56), Expect = 4.6
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Frame = +3
Query: 144 NCARSCPMSSAEVAD-----NSVDPPAKKR--KLNTGEAHSNNSAMANNGARVEDEIDES 302
N + P+S +E+++ +SV P KK NT + ++ + DE
Sbjct: 1637 NTTSTTPVSLSELSEITLFPSSVSPTWKKSFGNANTNLKYGLEDMSLSHRRGHKRTYDEH 1696
Query: 303 LYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLH 449
L + Q V HD M R+ S +SG+ G+G+ I G V S T+H
Sbjct: 1697 LNNVQQGV-NHD-MNRVHGSVGGMSGIVGIGIGIGDGDGDGDVDSRTIH 1743
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 4.6
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Frame = +3
Query: 144 NCARSCPMSSAEVAD-----NSVDPPAKKR--KLNTGEAHSNNSAMANNGARVEDEIDES 302
N + P+S +E+++ +SV P KK NT + ++ + DE
Sbjct: 1637 NTTSTTPVSLSELSEITLFPSSVSPTWKKSFGNANTNLKYGLEDMSLSHRRGHKRTYDEH 1696
Query: 303 LYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLH 449
L + Q V HD M R+ S +SG+ G+G+ I G V S T+H
Sbjct: 1697 LNNVQQGV-NHD-MNRVHGSVGGMSGIVGIGIGIGDGDGDGDVDSRTIH 1743
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 484 EERSATVQFLSSCKVTDFTP 425
EE++ F S CKV DFTP
Sbjct: 87 EEKNMGSSFHSECKVDDFTP 106
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/69 (23%), Positives = 25/69 (36%)
Frame = +3
Query: 360 SDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKNCTVADLSSQFYLSETVIGQNRALTSC 539
SDV+I G+ + N++ G + +KN A L + IG+
Sbjct: 244 SDVIICGVPSANYKFPSNLVRDGAVCICFSSEKNFDAASLKEHAGIYVPSIGKVTIAMLL 303
Query: 540 EQLSELNHY 566
L L Y
Sbjct: 304 RNLIRLTSY 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,186
Number of Sequences: 5004
Number of extensions: 71843
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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