Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_N09
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   1.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   8.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   8.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = +1

Query: 211 STWWLFVALAATGLSLYGVSLIDYALPEPLTRAAPVEKFIADIAYEHLVNLTSIGPRVFH 390
           ++WW  + +    L+L+G  L+  A+            FI  +A   L+    + P   +
Sbjct: 186 NSWWALILVIVPCLTLFGNVLVILAVVRERALQTVTNYFIVSLAVADLLVAVLVMPFAVY 245

Query: 391 V 393
           V
Sbjct: 246 V 246


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 260 YNDKPVAASATNS 222
           YNDKP+ AS  NS
Sbjct: 154 YNDKPIPASCCNS 166


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 461 SPRGISPQ*SGARPSSS 511
           SP G SPQ SG+  S+S
Sbjct: 63  SPTGSSPQHSGSSASTS 79


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 317 TGAALVSGSGNA*SINDT--PYNDKPVAASATNSHHVDS 207
           TG    + +GN    +D+    +D+P A++++N H  +S
Sbjct: 248 TGGNSGNAAGNNEDSSDSGAAASDRPPASASSNEHEAES 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,300
Number of Sequences: 438
Number of extensions: 3506
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)