Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_N08
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    30   1.8  
AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical ...    30   2.4  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    29   5.6  
AF125960-4|AAD14738.1|  292|Caenorhabditis elegans Hypothetical ...    28   7.4  
AL132863-10|CAN99717.1|  181|Caenorhabditis elegans Hypothetical...    28   9.8  

>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +3

Query: 348  VPTVTEQPSKTSMRQEHRT*PSLTSGRTXRPISSS*RCTDLTSAPALGTAPQEFCCWSEL 527
            V + T  PS T+         ++ S  T  P +++  C   T +   GT+  +    S  
Sbjct: 838  VSSTTTSPSTTTGSTPAPQSSTVASTTTVSPYTTT-ECICTTVSNTFGTSTTQGLTSSSA 896

Query: 528  QAAASTGANTMAS 566
            Q+ ASTG +T+AS
Sbjct: 897  QSTASTGVSTVAS 909


>AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical
           protein Y47D7A.7 protein.
          Length = 121

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -1

Query: 597 YGAPRKYTLA----LTPWYSPQYSPPPEALTSSRTPEE 496
           Y  P+KY +A     TP YS Q  P P A TSS   E+
Sbjct: 39  YPTPKKYPVAPTYPSTPSYSAQPPPAPSAYTSSDNQED 76


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
            protein Y47G6A.29 protein.
          Length = 2460

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 588  PRKYTLALTPWYSPQYSPPPEALTSSRTP 502
            P K T A+TP +SP  +P P A+  +RTP
Sbjct: 1501 PDKSTTAITPIHSPANAPTPTAM--NRTP 1527


>AF125960-4|AAD14738.1|  292|Caenorhabditis elegans Hypothetical
           protein T12B3.4 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 590 RRGSTPWP*RHGIRPSTRRRLKL*PAAELLRSGTERGR 477
           +RG TP   R GI PST RR    P+  ++ SG +  R
Sbjct: 14  QRGDTPTKQRSGILPSTPRRTSP-PSGAIVSSGGDEKR 50


>AL132863-10|CAN99717.1|  181|Caenorhabditis elegans Hypothetical
           protein Y37H2A.14 protein.
          Length = 181

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/70 (20%), Positives = 32/70 (45%)
 Frame = +1

Query: 349 SRRLQSNLQRHPCVRSIEHDHH*RQVGPXDPSVPADAVRTSHQRPRSVPLLRSSAAGQSF 528
           ++R  +N ++    R++E +H     G     +PA   +   + P+ +PL++ S   Q  
Sbjct: 42  AKRANNNRKKRDSQRTVEKEHI--SHGIVSTEIPAADPKAHDESPKQMPLVKKSKKSQKK 99

Query: 529 RRRRVLGRIP 558
             + ++   P
Sbjct: 100 TNKEIVEVAP 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,987,804
Number of Sequences: 27780
Number of extensions: 320119
Number of successful extensions: 830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)