Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_N08
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    58   1e-10
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   4.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   4.8  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 58.0 bits (134), Expect = 1e-10
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
 Frame = +2

Query: 266 LKGGAPXMGIEXAEPIVIDELSIALGAGPDGYRATFKDIHASGAS-NMTITNVRSDLXTH 442
           L GG     I   EP+ +D + I    G    R  +K+I   G + N+ I N   D    
Sbjct: 55  LAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKC 114

Query: 443 QFQLTLYGPHISARARYRSSGVLLLVRASGGGEYWGEYHGVKAKVYFRGAPYERDGRTYL 622
                 Y P +   A Y+  G +LL+   G G+     + +K+        YE++G TYL
Sbjct: 115 ILSSESYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYDLKSHNDIYCEKYEKNGETYL 174

Query: 623 KLQQLKLDFSVKDIKMGVENL 685
           ++++  + F+   +K+  ENL
Sbjct: 175 RIKKHAVKFNPAKVKLRFENL 195


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 620 LKLQQLKLDFSVKDIKMGVENLDTQTPYSRLH*TSSSVXTL 742
           +K+Q++ +DF V  +  GV N+++   + RL+    S+  L
Sbjct: 486 IKMQKVLIDFWVSFVNNGVPNVNS-VQWPRLNPNEKSLHYL 525


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 620 LKLQQLKLDFSVKDIKMGVENLDTQTPYSRLH*TSSSVXTL 742
           +K+Q++ +DF V  +  GV N+++   + RL+    S+  L
Sbjct: 486 IKMQKVLIDFWVSFVNNGVPNVNS-VQWPRLNPNEKSLHYL 525


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,957
Number of Sequences: 438
Number of extensions: 4021
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)