Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_N07
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 332 5e-92
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 326 2e-90
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 289 2e-79
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 237 1e-63
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 178 9e-46
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 136 5e-33
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 118 1e-27
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 104 1e-23
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 29 0.61
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.4
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 28 1.9
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 5.7
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 5.7
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 7.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 10.0
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 10.0
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 10.0
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 332 bits (815), Expect = 5e-92
Identities = 158/192 (82%), Positives = 176/192 (91%)
Frame = +2
Query: 8 EPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFD 187
EPTAAAIAYGLD+ GE NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD
Sbjct: 173 EPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD 232
Query: 188 NRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFY 367
+R+VNHF+QEFKRK KKD+ N RA+RRLRTACERAKRTLSSS QASIEIDSLFEGIDFY
Sbjct: 233 SRLVNHFIQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFY 292
Query: 368 TSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 547
TSITRARFEEL ADLFR TMEPVE+ LRD+K+DKA +++IVLVGGSTRIP+VQKL+ DFF
Sbjct: 293 TSITRARFEELCADLFRKTMEPVERVLRDSKVDKASVNEIVLVGGSTRIPRVQKLVSDFF 352
Query: 548 NGKELNKSINPE 583
NGKE KSINP+
Sbjct: 353 NGKEPCKSINPD 364
Score = 52.8 bits (121), Expect = 6e-08
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +3
Query: 582 NEAVXYGAAVQAAILHGDKSEEVQDLLLLDVTP 680
+EAV YGAAVQAA+L GD SE+ QDLLLLDV P
Sbjct: 364 DEAVAYGAAVQAAVLTGDTSEKTQDLLLLDVAP 396
Score = 52.0 bits (119), Expect = 1e-07
Identities = 27/48 (56%), Positives = 28/48 (58%)
Frame = +1
Query: 679 PLSLGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDXXPXXLIXVFXG 822
PLS+GIETAGGVMT LIKRN YSD P LI VF G
Sbjct: 396 PLSMGIETAGGVMTPLIKRNTTIPTKKSEIFSTYSDNQPGVLIQVFEG 443
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 326 bits (801), Expect = 2e-90
Identities = 155/192 (80%), Positives = 175/192 (91%)
Frame = +2
Query: 8 EPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFD 187
EPTAAAIAYGLD+ E NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD
Sbjct: 173 EPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD 232
Query: 188 NRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFY 367
+R+VNHF QEFKRK KKD+ N RA+RRLRTACERAKRTLSSS QASIEIDSL+EGIDFY
Sbjct: 233 SRLVNHFAQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLYEGIDFY 292
Query: 368 TSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 547
TSITRARFEEL ADLFR+TMEPVEK LRD+K+DK+ +++IVLVGGSTRIP++QKL+ DFF
Sbjct: 293 TSITRARFEELCADLFRNTMEPVEKVLRDSKIDKSSVNEIVLVGGSTRIPRIQKLVSDFF 352
Query: 548 NGKELNKSINPE 583
NGKE KSINP+
Sbjct: 353 NGKEPCKSINPD 364
Score = 52.8 bits (121), Expect = 6e-08
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +3
Query: 582 NEAVXYGAAVQAAILHGDKSEEVQDLLLLDVTP 680
+EAV YGAAVQAAIL GD SE+ QDLLLLDV P
Sbjct: 364 DEAVAYGAAVQAAILVGDTSEKTQDLLLLDVAP 396
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/48 (56%), Positives = 28/48 (58%)
Frame = +1
Query: 679 PLSLGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDXXPXXLIXVFXG 822
PLSLGIETAGGVMT LIKRN Y+D P LI VF G
Sbjct: 396 PLSLGIETAGGVMTPLIKRNTTIPTKKSEVFSTYADNQPGVLIQVFEG 443
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 289 bits (710), Expect = 2e-79
Identities = 134/192 (69%), Positives = 164/192 (85%)
Frame = +2
Query: 8 EPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFD 187
EPTAAAIAYGLD K +NVLIFDLGGGTFDVS+L I+ G+FEV +TAGDTHLGGEDFD
Sbjct: 177 EPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGEDFD 236
Query: 188 NRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFY 367
N +V HF+QEFKRK K D++ + RALRRLR+ACERAKR LSS TQ ++E+DSL GIDF
Sbjct: 237 NALVEHFIQEFKRKQKIDISDDPRALRRLRSACERAKRALSSVTQTTVEVDSLSNGIDFS 296
Query: 368 TSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 547
+SITRARFE++NA F++T++PV K L+D+K+ KA +HDIVLVGGSTRIPKVQ+L+ DFF
Sbjct: 297 SSITRARFEDINATTFKATIDPVAKVLKDSKVPKADVHDIVLVGGSTRIPKVQRLVSDFF 356
Query: 548 NGKELNKSINPE 583
+G+ LNKSINP+
Sbjct: 357 DGRALNKSINPD 368
Score = 42.3 bits (95), Expect = 8e-05
Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +3
Query: 555 RSSTNLLTLNEAVXYGAAVQAAIL-HGDKSEEVQDLLLLDVTP 680
R+ + +EAV YGAAVQAA+L + S++ QDLLLLDV P
Sbjct: 359 RALNKSINPDEAVAYGAAVQAAVLTNKADSDKTQDLLLLDVVP 401
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 237 bits (581), Expect = 1e-63
Identities = 109/192 (56%), Positives = 154/192 (80%)
Frame = +2
Query: 8 EPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFD 187
EPTAAAIAYGLDK T E++++++DLGGGTFDVS+L+I++G+FEV +T+GDTHLGGEDFD
Sbjct: 206 EPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGEDFD 264
Query: 188 NRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFY 367
NR++N+ + + RK D+ + +A+ +L+ E+AKRTLSS IEI+S F G DF
Sbjct: 265 NRVINYLARTYNRKNNVDVTKDLKAMGKLKREVEKAKRTLSSQKSVRIEIESFFNGQDFS 324
Query: 368 TSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 547
+++RA+FEE+N DLF+ T++PVE+ L+D+ + K++I DIVLVGGSTRIPKVQ+LL+ FF
Sbjct: 325 ETLSRAKFEEINMDLFKKTLKPVEQVLKDSNLKKSEIDDIVLVGGSTRIPKVQELLESFF 384
Query: 548 NGKELNKSINPE 583
GK+ +K INP+
Sbjct: 385 -GKKASKGINPD 395
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 543 SLMERSSTNLLTLNEAVXYGAAVQAAILHGDKSEEVQDLLLLDVTP 680
S + ++ + +EAV YGAAVQA +L G++ + +++LLDV P
Sbjct: 382 SFFGKKASKGINPDEAVAYGAAVQAGVLSGEEGSD--NIVLLDVIP 425
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/48 (43%), Positives = 23/48 (47%)
Frame = +1
Query: 679 PLSLGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDXXPXXLIXVFXG 822
PL+LGIET GGVMT LI RN D LI V+ G
Sbjct: 425 PLTLGIETTGGVMTKLIGRNTPIPTRKSQIFSTAVDNQNTVLIQVYEG 472
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 178 bits (433), Expect = 9e-46
Identities = 91/211 (43%), Positives = 140/211 (66%), Gaps = 4/211 (1%)
Frame = +2
Query: 8 EPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFD 187
EPTAAA+AYGLDKK + V +FDLGGGTFD+SIL + +G+FEV+ST GDTHLGGEDFD
Sbjct: 219 EPTAAALAYGLDKKN--DAIVAVFDLGGGTFDISILELNNGVFEVRSTNGDTHLGGEDFD 276
Query: 188 NRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGI--- 358
+V H V+ FK+ DL+ ++ A++R+R A E+AK LSS ++ I + +
Sbjct: 277 VALVRHIVETFKKNEGLDLSKDRLAVQRIREAAEKAKCELSSLSKTDISLPFITADATGP 336
Query: 359 -DFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 535
I+RA+FE+L L R T++P +++L+DA + ++I++++LVGG TR+P+V + +
Sbjct: 337 KHINMEISRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGMTRMPRVVETV 396
Query: 536 QDFFNGKELNKSINPERGRXLWCSCPGCYLA 628
+ F +E KS+NP+ + + G L+
Sbjct: 397 KSIFK-REPAKSVNPDEAVAIGAAIQGGVLS 426
Score = 37.9 bits (84), Expect = 0.002
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = +3
Query: 516 PRCRSSCKISLMERSSTNLLTLNEAVXYGAAVQAAILHGDKSEEVQDLLLLDVTP 680
PR + K S+ +R + +EAV GAA+Q +L G V+DL+LLDVTP
Sbjct: 390 PRVVETVK-SIFKREPAKSVNPDEAVAIGAAIQGGVLSG----HVKDLVLLDVTP 439
Score = 35.9 bits (79), Expect = 0.007
Identities = 21/48 (43%), Positives = 22/48 (45%)
Frame = +1
Query: 679 PLSLGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDXXPXXLIXVFXG 822
PLSLGIET GGV T LI RN +D I VF G
Sbjct: 439 PLSLGIETLGGVFTRLINRNTTIPTRKSQVFSTAADGQTAVEIRVFQG 486
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 136 bits (328), Expect = 5e-33
Identities = 73/201 (36%), Positives = 114/201 (56%), Gaps = 4/201 (1%)
Frame = +2
Query: 17 AAAIAYGLDKKGTGE----RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDF 184
AAA+ YG+ K E R V I D G + VSI+ G F +KST D +LG +
Sbjct: 180 AAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQFHIKSTVCDRNLGSRNM 239
Query: 185 DNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDF 364
D ++++F EFK KYK D+ +N +A RL TA ER K+ LS++ A + ++ + ID
Sbjct: 240 DKALIDYFAAEFKEKYKIDVLSNPKATFRLATAVERLKKVLSANANAPLNVEMIMNDIDA 299
Query: 365 YTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF 544
+ I R+ FEEL L P+EK+L A + K ++ I +VGG TR+P V++++ ++
Sbjct: 300 SSFIKRSDFEELIKPLLERLTPPIEKALELAGIKKEDLYSIEMVGGCTRVPIVKEVIANY 359
Query: 545 FNGKELNKSINPERGRXLWCS 607
F GK L+ ++N + C+
Sbjct: 360 F-GKGLSFTLNQDEAVARGCA 379
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 118 bits (284), Expect = 1e-27
Identities = 57/188 (30%), Positives = 108/188 (57%)
Frame = +2
Query: 8 EPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFD 187
+P A +A ++ ++ V++ + G +VS+++++ G+ + ++ D +LGGE
Sbjct: 199 DPAAVILALMYSEEVLIDKTVVVANFGATRSEVSVVSVKGGLMTILASVHDENLGGEQLT 258
Query: 188 NRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFY 367
+ +VN F +EF++K D N R+L +LR CE KR LS+ T AS +DSL +GIDF+
Sbjct: 259 DVLVNFFAKEFEKKNGIDPRKNARSLAKLRAQCEITKRVLSNGTTASAAVDSLADGIDFH 318
Query: 368 TSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 547
+SI R R++ + + V +++ A M+ I +++L GG++ PK+ L++ F
Sbjct: 319 SSINRLRYDLAASATLNRMADLVTEAVEKANMEPFDISEVILAGGASNTPKLTSLMESIF 378
Query: 548 NGKELNKS 571
+ + +S
Sbjct: 379 PEQTIIRS 386
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 104 bits (250), Expect = 1e-23
Identities = 63/202 (31%), Positives = 111/202 (54%), Gaps = 13/202 (6%)
Frame = +2
Query: 17 AAAIAYGLDKK-GTGERNVLIFDLGGGTFDVSIL---TIE-------DGIFEVKSTA-GD 160
A AI Y L + T +I+D G G+ +++ T+E I +++ A G
Sbjct: 199 AVAIEYSLSRSFSTDPTYNIIYDSGSGSTSATVISFDTVEGSSLGKKQNITRIRALASGF 258
Query: 161 T-HLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEI 337
T L G + + +++ F +K+ DL+ N RAL RL R K LS++++A I
Sbjct: 259 TLKLSGNEINRKLIGFMKNSFYQKHGIDLSHNHRALARLEKEALRVKHILSANSEAIASI 318
Query: 338 DSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP 517
+ L +GIDF ITR+ E L D+ + +EP+ K+L+ A + ++I+ I+L GG++RIP
Sbjct: 319 EELADGIDFRLKITRSVLESLCKDMEDAAVEPINKALKKANLTFSEINSIILFGGASRIP 378
Query: 518 KVQKLLQDFFNGKELNKSINPE 583
+Q L D+ + +++K++N +
Sbjct: 379 FIQSTLADYVSSDKISKNVNAD 400
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 29.5 bits (63), Expect = 0.61
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 228 NTKRTSLPTRELLGVCVLHVRGQR-GPCHRPHKRALR*ILSLR 353
N K+ LP E + + + V G GP H+PH R LR + LR
Sbjct: 9 NQKKNVLPKPEDIQLIICDVDGTLLGPDHKPHPRNLRALKYLR 51
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 186 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 76
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -3
Query: 186 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLS 40
+ S PP P + IP PPPRS ST R P P S
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 27.9 bits (59), Expect = 1.9
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Frame = +2
Query: 290 RAKRTLSSSTQASIEIDSLFEGIDFYTSITRAR-FEELNADLFRSTME--PVEKSLRDAK 460
R KR L + +++ + + +DF SI++ F + + + S + P DA
Sbjct: 126 RKKRNLPKEN-SELDLSNFQDDLDFENSISQKNEFSQKSPSVPLSPVSTFPASSISLDAS 184
Query: 461 MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPERGRXLWC 604
D + V VGGS+ I ++ + + F + K L + + R L+C
Sbjct: 185 SDVSAAD--VSVGGSSTIKEIGSIEETFTHEKTLMEELLDTVFRLLFC 230
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 5.7
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +2
Query: 38 LDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 208
LDK G+ I GG T SIL +GI VK E F+N F
Sbjct: 48 LDKAPAGKVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKF 104
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 222 LNSWTKWLTMRLSKSSPPKWVSPAVDF 142
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 341 SLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 499
SL G+D+YT I E +A +S+ E +K D + D++ D + VG
Sbjct: 331 SLARGLDYYTGIIYEAVTEASAPKIKSSAE--KKKSADPEADRSN-DDSIGVG 380
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 194 MVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASI 331
+++ F EFK++ K D + L+ L + C R R SS SI
Sbjct: 711 ILSSFSNEFKKRLKSDGTSIAHWLQGLASFCGRVFRRYSSLDCTSI 756
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +3
Query: 408 ICSGLPWSQ----WKSLSVMPRWIRLKSTILYWW 497
ICS LP + W + S PR+ R S ++ WW
Sbjct: 133 ICSALPAAGSIYLWAAESAGPRFGRFVSFLVAWW 166
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 90 AVPSTCPSLPSRMVSSR*NPPPATPTW 170
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,043
Number of Sequences: 5004
Number of extensions: 69349
Number of successful extensions: 303
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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