Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_N04
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.12
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.36
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.9
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 28 1.9
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 3.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.3
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 27 4.4
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 5.8
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 5.8
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.12
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Frame = +3
Query: 480 SRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPA--LPSREARPLPRQGSSAPTLPRGE 653
S P S+ + + L+R +P+ ++AP LPS +A P+P ++ P
Sbjct: 993 SAPLSKPVSTSPAAPLARV----PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTS 1048
Query: 654 TRAIPRSKLRCPYR-SPTPL*STSVSRQGARRQALPRACACSLPXRETQCLLXVPVEK 824
T +P+S P P P S+ + A A P +P + PV K
Sbjct: 1049 TPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPK 1106
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 558 PRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIPRSKLRCPY--RSPTPL*STSVSR 731
P G +P+ +A P+P S AP++ + PRS + P+ SP+P S+ S
Sbjct: 1222 PSAGLPPVPVPTAKAPPVPAPSSEAPSV------STPRSSVPSPHSNASPSPTSSSMASA 1275
Query: 732 QGAR 743
AR
Sbjct: 1276 APAR 1279
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 30.3 bits (65), Expect = 0.36
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Frame = +3
Query: 477 GSRPR--SRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRG 650
GS PR S A+ ++ S ++ S + P Q + PALPSR LP + S P++
Sbjct: 77 GSTPRTASPAVGNQDYSKPSYSQPS-YSQPSQPPKEPALPSRGTPSLPSRPGSRPSVLNQ 135
Query: 651 ETRAIPRSKLRCPYRSPTPL*STSVSRQGARRQALPRACACS-LPXRETQCLLXVP 815
E P + + P P +S Q+ A S LP L VP
Sbjct: 136 EQVPPPPVRPNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVP 191
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.9
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 606 PLPRQGSSAPTLPRGETRAIPRSKLRCPYRSPTPL*ST-SVSRQGARRQALPRACACSLP 782
PLP QG SAP P R+ P + R P PL S+ +VS A A+P A +LP
Sbjct: 352 PLPPQGRSAP--PPPPPRSAPSTG-----RQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404
Score = 26.6 bits (56), Expect = 4.4
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 486 PRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPT 638
PRS R+ LS +R A+ A PA+P R A LP G+++ T
Sbjct: 366 PRSAPSTGRQPPPLSSSR----AVSNPPAPPPAIPGRSAPALPPLGNASRT 412
Score = 26.6 bits (56), Expect = 4.4
Identities = 26/97 (26%), Positives = 40/97 (41%)
Frame = +3
Query: 378 PS*EARALSRQGSRAPTLRGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QAL 557
P +RA+S + P + GR A+ G SR + +P+ S ++ +L
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGN--ASRTSTPPVPTPP----SLPPSAPPSL 431
Query: 558 PRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIP 668
P + + + A PLP AP LP G A P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 301 IPTSPRPSPSSKASLXPHA-VDRPVPYPVEKHVPYPVKVAVPQP 429
+PT P PS+ SL P A P+ P +P +A P P
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 570 ARAPALPSREARPLPRQGSSAPTLPRGETRAIPRS 674
A + A+P EA+P P S+A P E+ +P +
Sbjct: 316 ATSDAVPPAEAKPEPVPASAAERAPTSESTTVPET 350
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +3
Query: 486 PRSR-AIPSRKEGALSRTRTS*QALPRQGARAPALPSR-EARPLPR--QGSSAP 635
PR R A P + A +R+ ++ ALP + P PSR + P P QG S+P
Sbjct: 2 PRRRSAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPPTAVQGGSSP 55
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 400 YPVKVAVPQPYEVVKHVPYHVKEYVKV 480
Y +K+ VP P+ ++H P HV Y ++
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISYTEL 2348
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 131 QLCFLSSSSHWQPLLLPAGKLSRA 60
++ L WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 370 VPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 477
+ YPV + P V V Q YEV V YH K+ +K
Sbjct: 304 ITYPVAETAPSLVVKVVNQDYEV--KVFYHYKDNIK 337
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 5.8
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 456 SREGVR*GSRPRSRAIPSRKEGALSRTRT-S*QALPRQGARAPALPSREARPLPRQGSSA 632
S + +R GS RSR+ PS + G R+ + S ++P A +P PR+
Sbjct: 335 SSQSLRLGSLHRSRS-PSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERD 393
Query: 633 PTLPRGETRAIPRS 674
PT+P + R+
Sbjct: 394 PTIPPDSIKVYSRT 407
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,402
Number of Sequences: 5004
Number of extensions: 52098
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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