Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_N03
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...   145   6e-36
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    31   0.27 
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.4  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.4  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   4.4  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.8  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   5.8  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   7.6  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      26   7.6  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   7.6  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score =  145 bits (352), Expect = 6e-36
 Identities = 84/230 (36%), Positives = 130/230 (56%), Gaps = 1/230 (0%)
 Frame = +3

Query: 144 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 323
           +H  +   ATLK I  RLKS+KNI+KIT+++K V+  K TRA+R ++A+  Y   + + +
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83

Query: 324 KRAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSR 500
           K A    PE+  K L VA +SD+GLCG +H+ +S++IR  L +P   EN  +  +G+K R
Sbjct: 84  KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142

Query: 501 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQ 680
             L R   +        IG   P+F +A Q+++ IL    ++    ++YNKF S VS+  
Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFET 202

Query: 681 SDLPLYTKKSIESASKLTAYDSLDSDVLXSYTEFSLAPLLFYALKXGACS 830
               LYT K+I  +  L+AY+  D +V     EF+ A  +F A+    CS
Sbjct: 203 VMKNLYTTKAINESPNLSAYEVSD-EVHQPLMEFAFANAIFSAMAEAHCS 251


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +3

Query: 342 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 506
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 507 LQRLYGKHIISVA 545
           L  +Y    ++VA
Sbjct: 129 LMTVYSLGELAVA 141


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 461 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 327
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 461 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 327
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 585  SQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVL 764
            S+ +  IL +  +FGS KII  K   +V    S   L  + +I     L    +L +D+ 
Sbjct: 2456 SEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIP 2515

Query: 765  XSY 773
             S+
Sbjct: 2516 QSF 2518


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 517 CTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSF 645
           C   ++L  L +S++   LS  +  +PL  + RDT L+   +F
Sbjct: 172 CETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNF 214


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 645 YNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLXSYTEFSLAPLL 800
           +++  +++ Y    LPL    S E+ SK  A+ ++   VL      +L PLL
Sbjct: 362 WHRILNILMYCSQYLPLKASTSKEAFSKTAAFANIYDRVLDFLDFEALIPLL 413


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
 Frame = +3

Query: 495 SRGILQRLYGKHIIS---VANEI-GRLPPTFLDASQLATA--ILTSGYEFGSGKIIYNKF 656
           S GILQ++ G H+++    A +I G++    ++  ++ T+  + +S  EF SG  +   F
Sbjct: 116 SFGILQKIIGAHVLANDGFAIDITGKVVCFSVNTGEVRTSFTVPSSSREF-SGLYLSTVF 174

Query: 657 KSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLXSY 773
           K++   +  ++ +           LT + S+ + V+  Y
Sbjct: 175 KNLALASSHNIHIVDLNHRNPIDSLTTHTSMINSVVFQY 213


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 23/103 (22%), Positives = 41/103 (39%)
 Frame = -3

Query: 824 GAXLQRVEQQRGQRELRVGXEHVAVQRVVRSQLAGALNRLLSVEGQVGLGVRDHRLELVV 645
           G  L  +EQQ  Q +++     V V    + Q     N   +   +V     + +  L  
Sbjct: 20  GVNLDELEQQ-AQTQVQAQSSQVVVPSEKQKQNLNLPNSYTNSSQKVRESTVNSQASLSS 78

Query: 644 NDLSGTKLVSRGEDSSGQLTCVQESRWETSDLISNTNDVLSVQ 516
           NDL    L+  GE++  +   +++S    + L S  N +   Q
Sbjct: 79  NDLRTELLIKSGENAILRANLLKQSEANNAALESLNNSIKQKQ 121


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 375 AMTSDRGLCGAVHTGVSKVIRNRLSE 452
           A+ SD  +C  V TG+S   ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,558,140
Number of Sequences: 5004
Number of extensions: 77259
Number of successful extensions: 239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)