Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_N02
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    97   2e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    56   5e-09
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    45   2e-05
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    44   2e-05
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.27 
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   3.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.3  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 40/56 (71%), Positives = 47/56 (83%)
 Frame = +2

Query: 89  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG 256
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+G
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAG 56


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 23/53 (43%), Positives = 37/53 (69%)
 Frame = +2

Query: 92  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 250
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS 55


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +2

Query: 89  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGXX 262
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E +G  
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSE-TGQG 59

Query: 263 KY 268
           KY
Sbjct: 60  KY 61


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 22/56 (39%), Positives = 31/56 (55%)
 Frame = +2

Query: 89  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG 256
           MRE++ +  GQ G QIG   WE+   EHGI P G    +S  ++ + N Y N+  G
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENS--EVHKNNSYLNDGFG 54


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect(2) = 0.27
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 785 PPPPPPXXXXXXXXXXXXXXGGGAPPP 865
           PPPPPP              G  APPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 23.0 bits (47), Expect(2) = 7.8
 Identities = 11/38 (28%), Positives = 11/38 (28%)
 Frame = +1

Query: 625 PXGGXSSXXXXXXXPPXXXGGGGXPXXXPXXGGGXPPP 738
           P G  SS       PP            P  G   PPP
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 22.2 bits (45), Expect(2) = 0.27
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +2

Query: 731 PPPFFXSXXXXXXXXXXXPPPPPP 802
           PPP               PPPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPP 316



 Score = 21.0 bits (42), Expect(2) = 7.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 784 PPPPPP 801
           PPPPPP
Sbjct: 361 PPPPPP 366


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 128 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 229
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +1

Query: 697 PXXXPXXGGGXPPPXFXFXXXXXXXXXXXPPPPPP 801
           P   P  GG  PPP               PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPP---PPGVAGAGPPPPPPPPP 783



 Score = 24.2 bits (50), Expect(2) = 4.3
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 737 GGGXPPPXXGXXXGXPPPP 681
           G   PPP  G     PPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPP 778



 Score = 20.6 bits (41), Expect(2) = 4.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 878 PXXXXGGGPPPP 843
           P    GG PPPP
Sbjct: 754 PAPIMGGPPPPP 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,396
Number of Sequences: 5004
Number of extensions: 48371
Number of successful extensions: 201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)