Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_M24
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    33   0.041
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    28   2.0  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   3.6  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   3.6  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   6.2  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   6.2  

>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 742 DARIIVAVGIPX*XHTXPNTCLFSKQTVFSGQEVSDVLQHLNKTD 608
           DA   VA+G+P      PN C+FS   V  G   +D+L H ++ +
Sbjct: 404 DAFNRVALGLPSNFKCFPNPCMFSINDVVFGVSTNDILLHTSREE 448


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 657 KTVCLENKQVXGXVCXXKG-IPTATIIRASXIY 752
           KT+C+E +   G  C   G IP+  ++  S IY
Sbjct: 70  KTICVEKRGTLGGTCLNVGCIPSKALLNNSHIY 102


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 418 PGLNLRTLSTFGHHRNRLCMVKLTGY 341
           P ++L  +  FG   N +CM +L GY
Sbjct: 234 PSISLENVLAFGDGANDVCMFELAGY 259


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 448 EESIAKAVRYSNVVINLVGRDYETKNFKYND 540
           +ESI+ +   SN+ ++L  R Y+TK  K+N+
Sbjct: 166 KESISSSTN-SNIKLHLAARKYQTKPEKFNE 195


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 23/80 (28%), Positives = 37/80 (46%)
 Frame = +1

Query: 436 HLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLS 615
           H L   S AK+     +  +  G D  + N K  +VH++ V +IA     EG+ R     
Sbjct: 58  HRLSSVSYAKSRTRLELTSSSHGSDTRSFNDKTKNVHLERVEKIASEWDPEGL-RVCFWD 116

Query: 616 YLNAEEHPKPLVLKKXSAWK 675
            +N ++ P  L+L+   A K
Sbjct: 117 AVNCDD-PDGLLLRFLRARK 135


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 139 TSKLLHLNGYMSVVYIKAAN-YSSDRKPNLAAYKRGTGGRSSFN 267
           + K LH+  ++ +      N YSS R    A+   GT    SFN
Sbjct: 242 SEKFLHIVQFLRISSFNTKNDYSSSRSKTTASSSNGTFASPSFN 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,268
Number of Sequences: 5004
Number of extensions: 60504
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)