Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_M24
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 82 5e-16
02_05_0515 + 29689259-29689535,29689867-29690209,29690475-296907... 33 0.40
01_01_0043 - 321810-321973,322054-322846 31 0.93
01_01_0044 - 326337-326500,326618-327398 31 1.2
01_01_0968 - 7618357-7618529,7618891-7619094,7620896-7621139,762... 31 1.6
12_01_0844 + 7915121-7915225,7915724-7915777,7915888-7915968,791... 30 2.1
11_06_0754 - 26935647-26937780,26940890-26941827 29 4.9
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834 29 6.5
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698... 29 6.5
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 28 8.6
06_03_0019 + 15506702-15506896,15507741-15507875,15508264-155085... 28 8.6
>02_05_1223 +
35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 82.2 bits (194), Expect = 5e-16
Identities = 42/112 (37%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Frame = +1
Query: 337 IGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 516
+G+Q+++P+RG + LK+ GDLGQ++ Y+ D +SI + SNVVINL+GR+YE
Sbjct: 1 MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60
Query: 517 TKNFKYNDVHVDGVRRIARICREE-GVERFIHLSYLNAEEHPKPLVLKKXSA 669
T+N+ +++V+ ++A I +E G+ RFI +S L A +L+ +A
Sbjct: 61 TRNYGFDEVNHHMAEQLAMISKEHGGIMRFIQVSSLGASASSPSRMLRAKAA 112
>02_05_0515 +
29689259-29689535,29689867-29690209,29690475-29690746,
29691282-29691478,29691874-29692237,29692831-29692898
Length = 506
Score = 32.7 bits (71), Expect = 0.40
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 448 EESIAKAVRYSNVVINLVGRDYETKNF----KYNDVHVDGVRRIARICREEGVERFIHLS 615
+E + KA+R + V +L K + ++V+++G + C E GV R +++S
Sbjct: 98 KEDVGKALRGVDCVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHGVRRLVYVS 157
Query: 616 YLNAEEHPKPLV 651
N +P+V
Sbjct: 158 TYNVVFGGEPIV 169
>01_01_0043 - 321810-321973,322054-322846
Length = 318
Score = 31.5 bits (68), Expect = 0.93
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +1
Query: 244 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 411
+GG + V G TG++GR+V ++G T L+ D AQ L D
Sbjct: 3 SGGDQTTTKSRILVVGGTGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLHTFRDA 62
Query: 412 GQVLFTPYHLLDEESIAKAVRYSNVVINLV 501
G L L D S+ +AVR ++VVI+ V
Sbjct: 63 GVTLLHG-DLHDHASLLRAVRDADVVISAV 91
>01_01_0044 - 326337-326500,326618-327398
Length = 314
Score = 31.1 bits (67), Expect = 1.2
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +1
Query: 244 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 411
+GG + I+ V G TG++GR+V ++G T L+ D +Q L+ D
Sbjct: 3 SGGEEKKSRIL--VVGGTGYIGRHVVLASARLGHPTTALVRDLSPSDPAKSQLLQSFRDA 60
Query: 412 GQVLFTPYHLLDEESIAKAVRYSNVVINLVG 504
G L L D S+ AVR ++VVI+ +G
Sbjct: 61 GVTLLHG-DLYDHASLLSAVRDADVVISTLG 90
>01_01_0968 -
7618357-7618529,7618891-7619094,7620896-7621139,
7623008-7623151,7623272-7623487
Length = 326
Score = 30.7 bits (66), Expect = 1.6
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Frame = +1
Query: 244 TGGRSSFNGIVATVFGCTGFVGRYVCNK---LGKIGTQLILPYRGDF---YDAQRLKVCG 405
T + S N V G TG +GR++ G L+ P D+ + K+
Sbjct: 2 TKTKKSNNDSTILVIGGTGIIGRHIVAASLDAGHPTLVLVRPTAASAAVDVDSDKAKLLA 61
Query: 406 DLGQVLFTPYH--LLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARIC 579
L T + + D ES+ A+R ++VVI+ VG V +DG ++
Sbjct: 62 SLVASGATIVYGDMNDRESLVAAIRQADVVISAVGH--------RGTVELDGQLKVVEAI 113
Query: 580 REEG-VERFIHLSY 618
+E G V+RF+ Y
Sbjct: 114 KEAGNVKRFVPSEY 127
>12_01_0844 +
7915121-7915225,7915724-7915777,7915888-7915968,
7916164-7916209,7916311-7916405,7916581-7916613,
7916941-7917286,7917372-7917511
Length = 299
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 250 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDL 411
GR+ VA V G + +GR + LGK G ++I+ Y +A+ +VC ++
Sbjct: 3 GRAKLAAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAE--EVCREI 54
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 586 EGVERFIHLSYLNAEEHPKPLVL 654
EG+++ + LSY N EH KP VL
Sbjct: 446 EGIKQVLDLSYNNLSEHLKPCVL 468
>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
Length = 939
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 348 LGTNFSQFVAHIASDKSGATENCGYDAVKATAATSTSLICCKVGF 214
+ ++FS A+ SDK EN G + ++ + TS KVGF
Sbjct: 548 ISSSFSNMTANDHSDKLNVKENVGNTIIHSSRSVDTSNAEHKVGF 592
>07_03_1727 +
29068348-29068571,29069473-29069514,29069593-29069839,
29069936-29070013,29070551-29070736,29070829-29071126,
29071775-29072244
Length = 514
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 274 VATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK-VC--GDLGQVLFTPYHLL 444
+A V G +G VC +L G +IL R + ++ +C +L ++F +L
Sbjct: 90 LAVVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKDAVESLCHESNLSNIIFHQLDIL 149
Query: 445 DEESIAKAVRYSN 483
D S A RY N
Sbjct: 150 DGNSRASLARYIN 162
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +1
Query: 445 DEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLN 624
D + + KAVR ++VVI++VG Y+DV + ++ IA I ++RFI + N
Sbjct: 78 DHDLLVKAVRAADVVISVVG---------YHDVG-EQMKIIAAIKEAGNIKRFIPSDFGN 127
Query: 625 AEEH 636
+H
Sbjct: 128 DADH 131
>06_03_0019 +
15506702-15506896,15507741-15507875,15508264-15508501,
15508652-15508855,15508945-15509111
Length = 312
Score = 28.3 bits (60), Expect = 8.6
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Frame = +1
Query: 283 VFGCTGFVGRYVCNKLGKIG--TQLIL--PYRGDFYDAQRLKVCGDLGQVLFTPYHLLDE 450
V G TG++GRY+ + T +++ P D A L+ D G L L
Sbjct: 13 VIGGTGYIGRYIVAASAREDHLTSVLVRDPAPADPAKAAVLQGFRDSGATL-VKGDLYGH 71
Query: 451 ESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLNAE 630
+S+ A++ ++VVI+ VG Y + D R I+ I V+RF Y N
Sbjct: 72 QSLVAAIKSADVVISAVG---------YAQL-ADQTRIISAIKEAGNVKRFFPSEYGNDV 121
Query: 631 EH 636
+H
Sbjct: 122 DH 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,305,310
Number of Sequences: 37544
Number of extensions: 371882
Number of successful extensions: 789
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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