Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_M21
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750... 30 2.6
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 29 3.5
10_07_0079 + 12665141-12665167,12665613-12665702,12665783-126663... 29 4.6
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 29 4.6
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904... 29 4.6
10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841 29 6.0
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 28 8.0
>02_02_0179 +
7500647-7500779,7503021-7503222,7503356-7503427,
7503655-7503726,7504212-7504283,7504711-7504782,
7505045-7505116,7505209-7505280,7505688-7505759,
7506215-7506292,7506670-7506729,7506810-7506848,
7506949-7506998,7507110-7507480,7508467-7508662,
7508856-7508936,7509694-7509848,7510302-7510512,
7510648-7510882,7510995-7511145,7511813-7512181
Length = 944
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 188 LRPLLLLFSGERQSENGQYDKVFHFSRIRLTKKNAFSKKNK 66
L PL L + G ENG+Y HF+ I T+ + FS K
Sbjct: 432 LSPLSLKYYGVCM-ENGEYSVELHFAEIVFTEDHTFSSNGK 471
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 289 ELSPFCGRSTCVVSEDQPPRLLELVEDCGPLPLTNP 396
++SP GRST +VS PR+ + G PL NP
Sbjct: 473 QVSPAPGRST-IVSSSNAPRIAPIRRSIGKSPLGNP 507
>10_07_0079 +
12665141-12665167,12665613-12665702,12665783-12666310,
12666341-12667741
Length = 681
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +3
Query: 183 PKTFRRLIPADVLRDFPGNVLRVHPLHHRRARQHLGAVSVLRPQHLRRQRGPAPQAAGAC 362
P+ F RL+ DVL FP + + H + +G VS LR L+ AP + A
Sbjct: 285 PRGFSRLLNLDVLWGFPVHGVAQGTAKHYCTLEDVGPVSQLRKLKLKGLEN-APSKSAAL 343
Query: 363 RRLRTSA 383
L T +
Sbjct: 344 AELGTKS 350
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = +3
Query: 321 RRQRGPAPQAAGACRR--LRTSATHQPQVPIR 410
RR+R PAP++ RR ++T+++H+ + P+R
Sbjct: 245 RRERSPAPRSRSPRRRSPVKTTSSHRERSPVR 276
>01_07_0298 -
42586007-42589742,42590167-42590280,42590295-42590437,
42591174-42591347
Length = 1388
Score = 29.1 bits (62), Expect = 4.6
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +3
Query: 267 RRARQHLGAVSVLRPQHLRRQRGPAPQAAGACRRLRTSATHQ---PQVPIRYRKDQ*DRS 437
RRARQ + +L P RRQR A RR T AT +V R+R +Q S
Sbjct: 88 RRARQRRQSQRLLPPSFSRRQR----TVTAAARRTATGATQHGDGGRVGARWRAEQGRGS 143
Query: 438 LPWLLPDLYLR-GGRQAG 488
D+Y GR+ G
Sbjct: 144 WGGTFTDIYAEVPGRREG 161
>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
Length = 348
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 231 PGNVLRVHPLHHRRARQHLGAVSVLRPQHLRRQRGPAPQAAGACRRLRT 377
PG+ R+ P H R H ++ P+ L PA AA +CRR T
Sbjct: 46 PGSPHRLPPAHRPARRLHTALLTTAPPRALVHSSLPAHLAA-SCRRFAT 93
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 250 STRCITVEPGNTWELSPFCGRSTCV-VSEDQPPRLLELVEDCGPLPLTNPKCQLDTE 417
ST + P T LSPFCGR +C+ +S D L+ G +N KC+ TE
Sbjct: 2739 STFTVNGLPIATTVLSPFCGRVSCIEISTDGHFALM------GTCSSSNYKCEDSTE 2789
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,927,343
Number of Sequences: 37544
Number of extensions: 316004
Number of successful extensions: 892
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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